| Rapaza viridis | NIES-4477 |
| Tetraselmis sp. | NIES-4478 |
| Closterium peracerosum-strigosum-littorale complex | NIES-4581 |
| Closterium peracerosum-strigosum-littorale complex | NIES-4582 |
| Closterium peracerosum-strigosum-littorale complex | NIES-4583 |
| Closterium peracerosum-strigosum-littorale complex | NIES-4584 |
| Nostoc sp. | NIES-4466 |
| Bigelowiella natans | NIES-3650 |
| Heterocapsa minima | NIES-4580 |
| Pleodorina japonica | NIES-4670, NIES-4671 |
| Scrippsiella donghaiensis | NIES-4577 |
| Takayama sp. | NIES-4578 |
| Alexandrium catenella | NIES-4678 |
| Anabaenopsis sp. | NIES-4685 |
| Apricichlorella intertidalis | NIES-4672 |
| Asterococcus korschikoffii | NIES-4688 |
| Chaetoceros debilis | NIES-4682 |
| Chlorella intertidalis | NIES-4673 |
| Coscinodiscus radiatus | NIES-4680 |
| Effrenium voratum | NIES-2908 |
| Euglena adhaerens | NIES-4677 |
| Euglena sociabilis | NIES-4689 |
| Karenia selliformis | NIES-4570, NIES-4571, NIES-4572, NIES-4573, NIES-4574, NIES-4586 |
| Neobrightwellia alternans | NIES-4683 |
| Parlibellus delognei | NIES-4681 |
| Penium polymorphum | NIES-4690 |
| Raphidiopsis curvispora | NIES-4674 |
| Symbiodinium sp. | NIES-2911 |
| Chlorella vulgaris | NIES-3264 |
| Volvox amboensis | NIES-4534 |
| Unidentified Oocystaceae | NIES-3919 |
| Eudorina sp. | NIES-4564 |
| Eudorina sp. | NIES-4565 |
| Eudorina sp. | NIES-4566 |
| Eudorina sp. | NIES-4567 |
| Eudorina sp. | NIES-4568 |
| Botryococcus braunii | NIES-4686 |
| Euglena agilis | NIES-3945 |
| Attheya longicornis | NIES-3967 |
| Chaetoceros sp. | NIES-3971 |
| Chlorogibba sp. | NIES-4668 |
| Hirugamonas aperieos | NIES-4634 |
| Lepidoparma frigida | NIES-4679 |
| Mychonastes hindakii | NIES-4569 |
| Navicula tripunctata | NIES-3965 |
| Pseudogoniochloris cf. tripus | NIES-4667 |
| Pseudostaurastrum enorme | NIES-4663 |
| Tetraëdriella jovetii | NIES-4665 |
| Tetraëdriella regularis | NIES-4664 |
| Tetraëdriella sp. | NIES-4666 |
| Tetraëdron regulare | NIES-4669 |
| Cyanidioschyzon merolae | NIES-4696 |
| Eucampia cornuta | NIES-4081 |
| Eucampia zodiacus | NIES-4492 |
| Gephyrocapsa sp. | NIES-4627 |
| Merismopedia sp. | NIES-4406 |
| Mychonastes homosphaera | NIES-4546 |
| Mychonastes pushpae | NIES-4547 |
| Nitella pulchella | NIES-2833 |
| Pseudanabaena foetida var. foetida | NIES-4497, NIES-4498 |
| Pseudodidymocystis planctonica | NIES-4443 |
| Tetrastrum staurogeniaforme | NIES-4389 |