| Reference |
Strain (s) |
| Aghazada, S., Suzuki, K., Inaba, Y., Atsuji, K., Iwamoto, K.
2025 Isolation and identification of high biomass and lipid productivity Euglena strain from tropical Malaysian environments for enhancement of biofuel production.
Mar. Biotechnol., 27, 127 (article ID). |
Euglena gracilis NIES-48
|
| Ahmad, I., Hassan, L. H. S., Abdullah, N., Kamyab, H., Dailami, A. A., Iwamoto, K.
2025 Bioremediation of restaurant wastewater using extremophilic Galdieria sulphuraria: An approach contributing to circular bioeconomy and environmental sustainability.
Eng. Sci. Technol., 68, 102091 (article ID). |
Galdieria javensis NIES-3638
|
| Bessyo, A., Sada, R., Kodama, Y.
2025 Experimental infection of aposymbiotic Paramecium bursaria with starch and oil-producing Parachlorella kessleri.
J. Appl. Phycol. |
Chlorella kessleri NIES-2152
|
| Boivin, S., Nagaoka, H., Fujioka, T.
2025 Real-time detection of 3–8-µm microbial particles in sand filter effluent as a surrogate indicator of Cryptosporidium parvum oocysts.
Water Res. X, 27, 100345 (article ID). |
Chlorella vulgaris var. vulgaris NIES-642
|
| Carrillo-Carrasco, V. P., van Galen, M., Bronkhorst, J., Mutte, S., Kohlen, W., Sprakel, J., Hernández-García, J., Weijers, D.
2025 Auxin and tryptophan trigger common responses in the streptophyte alga Penium margaritaceum.
Curr. Biol., , 2078-2087. |
Penium margaritaceum NIES-217
|
| Chen, Y., Xiong, Q., Dai, Q., Liu, G.
2025 Six newly sequenced chloroplast genomes from quadriflagellate Chlamydomonadales (Chlorophyceae): Phylogeny and comparative genome analyses.
Genome Biol. Evol., 17, evaf074 (article ID). |
Astrephomene gubernaculifera NIES-4017,
Basichlamys sacculifera NIES-566,
Carteria cerasiformis NIES-425,
more
C. radiosa NIES-432,
Desmotetra delicata NIES-153,
Hafniomonas laevis NIES-257,
Lobomonas monstruosa NIES-474,
Platydorina caudata NIES-728,
Pleodorina starrii NIES-1363,
Vitreochlamys aulata NIES-875
close
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| Costa, K. A., Harii, S., Camacho, C. G., Donaldson, J., Jolly, J., McMahon, S., Ravasi, T., Bowden, J. A.
2025 Effects of PFOS on larval symbiont acquisition, lipidome, and metamorphosis of an Acropora coral.
Mar. Biol., 172, 91 (article ID). |
Durusdinium trenchii NIES-2907
|
| D'Arelli, A., Carlin, M., Sosa, S., Melchiorre, C., Varriale, F., Tartaglione, L., Varra, M., Kulis, D., Anderson, D. M., Poli, M.
2025 Cutaneous effects of ovatoxin-a: an in vitro study on human skin keratinocytes.
Arch. Toxicol. |
Ostreopsis cf. ovataNIES-3351
|
| Gu, Q., Chowdhary, A. K., Sekine, M., Toda, T.
2025 Enhanced astaxanthin accumulation in the microalga Haematococcus lacustris in seawater through the combination of salinity, nitrogen starvation and high light.
Plankton Benthos Res., 20, 293–297. |
Haematococcus lacustris NIES-144
|
| Gu, Q. Y., Takayama, Y., Natori, N., Hirahara, M., Chowdhary, A. K., Toda, T.
2024 A novel stepwise salinity acclimation method to improve the survival of freshwater microalgae Haematococcus lacustris in seawater salinity.
Bioprocess. Biosyst. Eng., 48, 43-52. |
Haematococcus lacustris NIES-144
|
| Haraguchi, Y., Okamoto, Y., Asahi, T., Shimizu, T.
2025 Nitrogenous fertilizer-free microalgal culture using nitrogen-fixing cyanobacteria-derived extracts for sustainable food production.
Phycol. Res. |
Scytonema sp. NIES-2130
|
| Guenachi. B., Mefti, H. K., Benfares, R., Abderrahmani, K., Boudjema, K., Achour, H. Y., Toumatia, O., Bidin, A., Lamar, L.
2025 Morphological and molecular identification of a new halotolerant cyanobacterial strain, Limnospira fusiformis TL03, isolated from Telamine Lake in the northwest of Algeria.
Acta Bot. Bras., 39, e20230137 (article ID). |
Planktothrix agardhii NIES-204
|
| Hilzinger, J. M., Friedline, S., Sivanandan, D., Cheng, Y. F., Yamazaki, S., Clark, D. S., Skerker, J. M., Arkin, A. P.
2025 Acetaminophen production in the edible, filamentous cyanobacterium Arthrospira platensis.
Biotechnol. Bioeng., 122, 44-52. |
Arthrospira platensis NIES-39
|
| Hu, W., Teng, Y., Wang, X., Xu, Y., Sun, Y., Wang, H., Li, Y., Dai, S., Zhong, M., Luo, Y.
2025 Mixotrophic cyanobacteria are critical active diazotrophs in polychlorinated biphenyl-contaminated paddy soil.
ISME Commun., 5, ycae160 (article ID). |
Cylindrospermum sp. NIES-4074
|
| Ishida, H., Fukuda, N., Shimada, M., Yamamoto, K., Gaponova, L., Higuchi, R., Kolosiuk, A., Hoshina, R., Arikawa, M., Fukuda, Y., Islam, MS., Harumoto, T., Wan, Y., Itoh, T., Inai, Y., Takeishi, A., Aonuma, H., Kikuchi, T., Nishigori, S., Maruyama, T., Ikeda, K., Iriko, H., Suzaki, T.
2025 Artifact-free preparation of biological samples for SEM by optimized water freeze-drying.
Sci Rep, 16, 717 (article ID). |
Ceratium hirundinella NIES-4632
|
| Kamakura, S., Yamada, K., Arguelles, E. D. L. R., Kuwata, A., Nagumo, T., Takahashi, M., Sawada, K., Ichinomiya, M., Sato, S.
2025 Reminiscent of the pre-diatom? A hitherto undescribed scaly bolidophyte Lepidoparma frigida gen. et sp. nov. in a new order Lepidoparmales based on morphology, phylogeny, and ecology.
J. Phycol., 61, 757-776. |
Lepidoparma frigida NIES-4679
|
| Karimi-Fard, A., Saidi, A., Tohidfar, M., Emami, S. N.
2025 Integrative bioinformatics approaches reveal key hub genes in cyanobacteria: insights from Synechocystis sp. PCC 6803 and Geminocystis sp. NIES-3708 under abiotic stress conditions.
Genes Genom. |
Geminocystis sp. NIES-3708
|
| Kato, K., Kumazawa, M., Nakajima, Y., Suzuki, T., Dohmae, N., Shen, J., Ifuku, K., Nagao, R.
2025 Structure of a photosystem I supercomplex from Galdieria sulphuraria close to an ancestral red alga.
Sci. Adv., 11, eadv7488 (article ID). |
Cyanidium caldarium NIES-2137, Galdieria javensis NIES-3638
|
| Kawaguchi, Y. W. & Yamamichi, M.
2025 A single episode of sexual reproduction can produce large variation in population growth rates under dual stressors.
J. Evol. Biol. |
Closterium peracerosum-strigosum-littorale complex NIES-64, NIES-65
|
| Kawai-Toyooka, H., Ono, M., Hamaji, T., Nozaki, H., Hirono, M.
2025 Synergistic effects of proteinaceous pheromone and nitrogen starvation on male gametogenesis in the anisogamous volvocine alga Eudorina.
PLoS One, 20, e0326066 (article ID). |
Eudorina sp. NIES-2734,
NIES-2735,
NIES-4100,
more
close
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| Kishikami, T., Ota, M., Ishida, K., Yamada, K., Kataoka, T.
2025 Morphology and ultrastructure of marine bacterivorous bicosoecid Hirugamonas aperieos gen. et sp. nov.
Protist, 178, 126104 (article ID). |
Hirugamonas aperieos NIES-4634
|
| Kumari, S., Kumar, V., Kothari, R., Kumar, P.
2025 Utilizing industrial wastewater for cultivation of Chlorella vulgaris NIES‑227: A study on biodiesel yield optimization with alkali catalysts.
Water Air Soil Pollut., 136, 466 (article ID). |
Chlorella vulgaris var. vulgaris NIES-227
|
| Kurtović, K., Vosolsobě, S., Nedvěd, D., Müller, K., Dobrev, P. I., Schmidt, V., Piszczek, P., Kuhn, A., Smoljan, A., Fisher, T. J., Weijers, D., Friml, J., Bowman, J. L., Petrásek, J.
2025 The role of indole-3-acetic acid and characterization of PIN transporters in complex streptophyte alga Chara braunii.
New Phytol. |
Chara braunii NIES-1604
|
| La Rocca, R., Kato, K., Tsai, P.-C., Nakajima, Y., Akita, F., Shen, J.-R.
2025 Structure of a photosystem II-FCPII supercomplex from a haptophyte reveals a distinct antenna organization.
Nat. Commun., 16, 4175 |
Chrysotila roscoffensis NIES-8
|
| Lee, V., Meza-Padilla, I., Nissimov, J. I.
2025 Virus Infection of a freshwater cyanobacterium contributes significantly to the release of toxins through cell lysis.
Microorganisms, 13, 486 (article ID). |
Microcystis aeruginosa NIES-298
|
| Ma, H., Wang, Z., Ge, F., Zhang, C.-C.
2025 Chloroplast budding mediates β-carotene transport for early stage astaxanthin hyperaccumulation in microalgae.
Plant Physiol., 199, kiaf423 (article ID). |
Haematococcus lacustris NIES-144
|
| Manawadu, B., Senavirathna, M. D. H.J., Fujino, T.
2025 Interactive effects of ionophore antibiotic monensin and polystyrene Microplastics on the growth and physiology of Microcystis aeruginosa.
, 43, 43 (article ID). |
Microcystis aeruginosa NIES-111
|
| Martin, R. M., Denison, E. R., Pound, H. L., Barnes, E. A., Chaffin, J. D., Wilhelm, S. W.
2025 Mitomycin C eliminates cyanobacterial transcription without detectable prophage induction in a Microcystis-dominated harmful algal bloom in Lake Erie.
Microbiol. Spectr., 13, e0287224 (article ID). |
Microcystis aeruginosa NIES-88, NIES-298
|
| Masson, M. L. P., de Freitas, B. B., Zybinskii, A., Althagafi, G., Amad, M., Fox, M. D., Lammers, P. J., Lauersen, K. J.
2025 Elevated carbon dioxide stimulates efficient organic carbon consumption for the unicellular alga Galdieria.
Trends Biotechnol. |
Cyanidioschyzon merolae NIES-3377
|
| Mogi, Y., Matsuo, Y., Kondo, Y., Higashiyama, T., Inada, T., Yoshida, Y.
2025 Genome-wide changes of protein translation levels for cell and organelle proliferation in a simple unicellular alga.
Proc. Jpn. Acad. Ser. B-Phys. Biol. Sci., 101, 41-53. |
Cyanidioschyzon merolae NIES-3377
|
| Moroi, K., Yamamoto, T., Kurita, T.
2025 Double-strand break-free and transgene-free genome editing in the microalga Nannochloropsis oceanica using removable vectors containing the CRISPR base editing system.
Sci Rep,, 15, 42431 (article ID). |
Nannochloropsis oceanica NIES-2145
|
| Nagao, R., Ogawa, H., Suzuki, T., Dohmae, N., Kato, K., Nakajima, Y., Shen, J.-R.
2025 Biochemical evidence for the diversity of LHCI proteins in PSI-LHCI from the red alga Galdieria sulphuraria NIES-3638.
Photosynth. Res., 163, 14 (article ID). |
Galdieria javensis NIES-3638
|
| Nomura, T., Kim, J.-S., Iwata, O., Yamada, K., Atsuji, K., Uehara-Yamaguchi, Y., Yoshida, T., Inoue, K., Takahagi, K., Sakurai, T., Shinozaki, K., Ito, T., Suzuki, K., Goda, K., Mochida, K.
2025 Genetic dissection of nonconventional introns reveals codominant noncanonical splicing code in Euglena.
Proc. Natl. Acad. Sci. U. S. A., 122, e2509937122 (article ID). |
Euglena agilis NIES-3945
|
| Nozaki, H., Matsuzaki, R., Ishida, T., Ueki, N., Kawachi, M., Tanabe, Y.
2025 Taxonomic identification of an Australian strain of Volvox amboensis (Chlorophyceae).
Microb. Resour. Syst. |
Volvox amboensis NIES-4534
|
| Nozaki, H., Matsuzaki, R., Mori, F., Sato, M., Yamaguchi, H., Higashiyama, T., Kawachi, M., Tanabe, Y.
2025 Description of four new species of Mychonastes (Chlorophyceae) from Japanese freshwater habitats based on molecular and morphological data.
Phycol. Res., 73, 35-48. |
Mychonastes afer NIES-2897,
Mychonastes ariiae NIES-2900,
Mychonastes frigidus NIES-2339,
more
Mychonastes gigas NIES-2340,
Mychonastes homosphaera NIES-2341, NIES-4546,
Mychonastes kasaiae NIES-3743,
Mychonastes pushpae NIES-3742, NIES-4547,
Mychonastes takamurae NIES-2334, NIES-2336
close
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| Nozaki, H., Mori, F., Tanaka, Y., Matsuzaki, R., Yamaguchi, H., Kawachi, M., Tanabe, Y.
2025 Establishment of cryopreserved culture strains of Volvox (Chlorophyceae).
Phycologia, 64, 389-393. |
Volvox carteri f. nagariensis NIES-865,
Volvox gigas NIES-867,
Volvox powersii NIES-4127,
|
| Okada, K., Fujiwara, T., Hirooka, S., Kobayashi, Y., Onuma, R., Miyagishima, S-Y.
2025 The closed nutrient recycling system in the Paramecium-Chlorella photosymbiosis contributes to survival under oligotrophic conditions.
Sci. Adv., 11, eadz0004 (article ID). |
Paramecium bursaria NIES-2891
|
| Okazaki, K., Hori, K., Iwai, M., Kurita, T., Shimizu, S., Nomura, S., Saito, F., Maeda, S., Takami, A., Yamamoto, T., Ohta, H., Sakamoto, A.
2025 Knockout of an SPX-related gene for polyphosphate synthetase accelerates phosphate starvation responses in the oleaginous microalga Nannochloropsis oceanica.
J. Exp. Bot., eraf171. |
Nannochloropsis oceanica NIES-2145
|
| Pham, H. T. L., Ngo, T. T., Tran, T. V., Duong, T. A., Tran, L. D., Tran, A. T. T., Nguyen, V. T. H., Nguyen, S. V.
2025 Classification of Nostoc-like cyanobacteria isolated from paddy soil into Aliinostoc, Aulosira, and Desmonostoc.
Front. Microbiol., 16, 1581725 (article ID). |
Aulosira laxa NIES-50
|
| Pimentel, J. d. M., Nunes, Á. C., Pereira, D. A., Giani, A.
2025 Cyanobacteria gene expression in response to environmental stress and seasonal changes.
World J. Microbiol. Biotechnol., 41, 163 (article ID). |
Microcystis aeruginosa NIES-98, NIES-843
|
| Sato, N., Ikemura, E., Uemura, M., Awai, K.
2025 Genomic and biochemical analyses of lipid biosynthesis in Cyanophora paradoxa: limited role of the chloroplast in fatty acid synthesis.
J. Exp. Bot., 76, 532-545. |
Cyanophora paradoxa NIES-547
|
| Satou, W., Nagai, N., Hatamoto, M.
2025 Legionella survives and elongates in algal consortia containing bacteria in alkaline oligotrophic conditions.
Microbes Environ., 40, ME25016 (article ID). |
Vischeria stellata NIES-2148
|
| Senavirathna, M. D. H. J. & Jayasekara, M. A. D. D.
2025 Influence of temperature regimes on the production of 2‐MIB and geosmin by Pseudanabaena galeata and Phormidium ambiguum.
Water Environ. Res., 97, e70201 (article ID). |
Phormidium ambiguum NIES-2119, Pseudanabaena foetida NIES-512
|
| Senavirathna, M. D. H. J., Yan, H. Y., Wijesinghe, A.
2025 The effect of salinity on Myriophyllum sp. "Roraima" and Microcystis aeruginosa and their allelopathic interaction.
Biologia, 80, 3273-3289. |
Microcystis aeruginosa NIES-111
|
| Shikata, T., Yuasa, K., Kitatsuji, S., Yano, R.
2025 Vegetative‑cell morphology changes depending on nutritional conditions in Japanese strains of the noxious red‑tide microalgae Chattonella.
Fish. Sci. |
Chattonella marina var. antiqua NIES-1
|
| Shioura, Y., Kenzaki, A., Okunishi, S., Tomoda, T., Maeda, H.
2025 Influence of environmental factors on the feeding behavior of reared Japanese eel Anguilla japonica preleptocephali given picocyanobacteria.
Aquac. Int., 33, 312 (article ID). |
Synechococcus sp. NIES-976
|
| Suzuki, S., Ota, S., Tanabe, Y.
2025 Contamination in the model species Cyanidioschyzon merolae NIES-3377.
Microb. Resour. Syst., 41, 44-55. |
Cyanidioschyzon merolae NIES-3377
|
| Tada, Y., Hori, K., Kosaka, K., Echigo, S., Itoh, S.
2025 Structural estimation of high-molecular-weight and ultra-hydrophilic trichloroacetic acid precursors originated from raphidophytes.
Environ. Sci. Technol., 59, 22807-22818. |
Gonyostomum semen NIES-1380
|
| Takahashi, I. Y., Suzuki, T., Hirooka, S., Dohmae, N., Miyagishima, S., Nagao, R.
2025 Comparative analysis of biochemical and sequence features of PSI-LHCI supercomplexes from Cyanidium caldarium NIES-551 and Cyanidiococcus yangmingshanensis NIES-2137.
Photosynth. Res., 163, 48 (article ID). |
Cyanidium caldarium NIES-551, NIES-2137
|
| Tokodi, N., Łobodzińska, A., Klimczak, B., Antosiak, A., Młynarska, S., Šulčius, S., Avrani, S., Yoshida, T., Dziga, D.
2025 Proliferative and viability effects of two cyanophages on freshwater bloom-forming species Microcystis aeruginosa and Raphidiopsis raciborskii vary between strains.
Sci Rep, 15, 3152 (article ID). |
Microcystis aeruginosa NIES-298
|
| Tomaru, Y.
2025 Kinetics of adsorption of two distinct viruses to marine planktonic diatom Chaetoceros tenuissimus Meunier.
Plankton Benthos Res., 20, 142-147. |
Chaetoceros socialis f. radians NIES-3713,
Chaetoceros tenuissimus NIES-3714
|
| Tsai, P.-C., Kato, K., Shen, J.-R., Akita, F.
2025 Structural study of the chlorophyll between Lhca8 and PsaJ in an Antarctica green algal photosystem I-LHCI supercomplex revealed by its atomic structure.
Biochim. Biophys. Acta-Bioenerg., 1866, 149543 (article ID). |
Coccomyxa subellipsoidea NIES-2166
|
| Yamamoto, Y. N., Suzuki, T., Ueno, Y., Tomo, T., Dohmae, N., Takabayashi, A., Nagao, R.
2025 Biochemical and phylogenetic analyses of light-harvesting complexes from Tetraselmis striata.
Photosynth. Res., 163, 32 (article ID). |
Tetraselmis striata NIES-1019
|
| Yang, H. W., Song, J.-Y., Song, J.J., Kim, Y. W., Rockwell, N., Kim, W., Kim, H., Lagarias,J. C., Park, Y.-I.
2025 Dual-Cys bacteriophytochromes: intermediates in cyanobacterial phytochrome evolution?
FEBS J. |
Nostoc carneum NIES-2107
|
| Yoneda, K., Kobayashi, C., Araie, H., Morita, R., Harada, R., Shigeta, Y., Endo, H., Maeda, Y., Suzuki, I.
2025 Characterization of delta-7 alkenone desaturase in haptophyte Gephyrocapsa huxleyi through heterologous expression in Tisochrysis lutea.
Mar. Biotechnol., 27, 44 (article ID). |
Emiliania huxleyi NIES-837
|
| Yoneda, K., Suzuki, S., Kawachi, M., Endo, H., Kato, A., Takeda, T., Maeda, Y., Suzuki, I.
2025 Draft genome sequence of a marine coccolithophore Chrysotila carterae NIES-4509.
Microbiol. Resour. Ann., 14, e0135724 (article ID). |
Pleurochrysis carterae NIES-4509
|
| Yurtsever, A., Daicho, K., Priante, F., Miyazawa, K., Alam, M. S., Miyata, K., Yabuki, A., Isobe, N., Saito, T., Foster, A. S., Fukuma, T.
2025 Interplay between β-Chitin nanocrystal supramolecular architecture and water structuring: Insights from three-dimensional atomic force microscopy measurements and molecular dynamics simulations.
J. Am. Chem. Soc., 147, 39134–39150. |
Phaeocystis globosa NIES-1396
|
| Zhang, W., Yonehara, N., Ishii, M., Jiang, H., La Rocca, R., Tsai, P.-C., Li, H., Kato, K., Akita, F., Shen, J.-R.
2025 Structural analysis of PSI-ACPI and PSII-ACPII supercomplexes from a cryptophyte alga Rhodomonas sp. NIES-2332.
Front. Plant Sci., 16, 1716939 (article ID). |
Rhodomonas sp. NIES-2332
|