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Strain Data
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| Strain number | NIES-1332 | |||
|---|---|---|---|---|
| Phylum | Rhodophyta | |||
| Class | Cyanidiophyceae | |||
| Scientific name | Cyanidioschyzon merolae De Luca, Taddei & Varano | |||
| Synonym | ||||
| Former name | ||||
| Common name | Red alga | |||
| Locality (Date of collection) | Sardinia Isl., Italy | |||
| Latitude / Longitude | ||||
| Habitat (Isolation source) | Hot spring (Water) | |||
| History | < Kuroiwa, Tsuneyoshi | |||
| Isolator (Date of isolation) | Toda, Kyoko | |||
| Identified by | ||||
| State of strain | Cryopreservation; Unialgal; Clonal; Non-axenic | |||
|
Culture condition (Preculture condition) |
Medium:
M-Allen
Temperature: 37 C Light intensity: 10-11 µmol photons/m2/sec, L/D cycle: 10L:14D Duration: 6 M |
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| Gene information | Nuclear DNA (chromosome 1-20) ( AP006483-AP006502 ) , Mitochondria genome ( D89861 ) , Plastid genome ( AB002583 ) , aladh ( AB159599 ) , atpC ( AB159600 ) , gnd ( AB159595 AB159596 ) , Hsp70 ( AB095185 ) , Hsp90 ( AB095179 AB095186 ) , pgk ( AB159598 ) , psbO ( AB159597 ) , RPB1 ( AB095180 AB095187 ) , RpS8b ( AB095181 AB095188 ) , TPI ( AB095182 AB095189 ) , VatA ( AB095183 AB095190 ) , VatB ( AB095184 AB095191 ) | |||
| Cell size (min - max) | - 4 μm | |||
| Organization | Unicellular | |||
| Characteristics | Planktonic ; Acidophilic ; Thermophilic ; Genome decoded strain | |||
| Other strain no. | Other strain no. : 10D | |||
| Remarks | NIES-4696 is available. | |||
| Movie | ||||
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Related strain information
(Large number of orders and same genus or species)
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|---|---|---|---|---|
| Strain number | Scientific name | Common name | Habitat (Isolation source) | Characteristics |
|
NIES-1804 |
Cyanidioschyzon merolae | Red alga | Hot spring | Planktotnic ; Acidophilic ; Pigmentation paler than wild type |
|
NIES-1805 |
Cyanidioschyzon merolae | Red alga | Hot spring | Planktotnic ; Acidophilic ; Mutant of NIES-1332 (Uracil-required;（ 5-FOA tolerant) |
|
NIES-1806 |
Cyanidioschyzon merolae | Red alga | Hot spring | Planktotnic ; Acidophilic ; Mutant of NIES-1332 (Uracil-required;（ 5-FOA tolerant) |
|
NIES-4696 |
Cyanidioschyzon merolae | Red alga | Hot spring (NIES-3377) | Thermophilic (opt. 40-45℃（) ; Acidophilic (pH 1.5-2.4) ; Genome decoded strain |
|
NIES-3377 |
Cyanidioschyzon merolae | Red alga | Hot spring (Water) | Planktonic ; Thermophilic (opt. 40-45℃（) ; Acidophilic (pH 1.5-2.4) ; Phototaxic ; Genome decoded strain |
|
Related strain information
(Used in same reference)
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|---|---|---|---|---|
| Strain number | Scientific name | Common name | Habitat (Isolation source) | Characteristics |
NIES-547
|
Cyanophora paradoxa | Freshwater (Lake water) | alkalophilic | |
NIES-626
|
Pterosperma cristatum | Marine (Seawater) | ||
|
NIES-2137 |
Cyanidium caldarium | Red alga | Hot spring | |
NIES-1441
|
Percolomonas sp. | Marine (Seawater) | Heterotrophic ; Phagotrophic | |
|
NIES-254 |
Pyramimonas parkeae | Marine (Seawater) | Red tide ; Prey for Oxyrrhis marina NIES-494 and NIES-3607 | |
| Reference |
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|
Matsuzaki, M. et al.
2004
Genome sequence of the ultrasmall unicellular red alga Cyanidioschyzon merolae 10D.
Nature,
428,
653-657.
Strain(s): 1332, 3377 PubMed: 15071595 DOI: 10.1038/nature02398 Ohta, N., Matsuzaki, M., Misumi, O., Miyagishima, S., Nozaki, H., Tanaka, K., Shin-I, T., Kohara, Y., Kuroiwa, T. 2003 Complete sequence and analysis of the plastid genome of the unicellular red alga Cyanidioschyzon merolae. DNA Res., 10, 67-77. Keywords: Cyanidioschyzon merolae; red algae; plastid; genome sequencing Strain(s): 1332, 3377 PubMed: 12755171 DOI: 10.1093/dnares/10.2.67 Ohta, N., Sato, N., Kuroiwa, T. 1998 Structure and organization of the mitochondrial genome of the unicellular red alga Cyanidioschyzon merolae deduced from the complete nucleotide sequence. Nucleic Acids Res., 26, 5190-5198. Strain(s): 1332, 3377 PubMed: 9801318 DOI: 10.1093/nar/26.22.5190 Nozaki, H., Matsuzaki, M., Takahara, M., Misumi, O., Kuroiwa, H., Hasegawa, M., Shin-i, T., Kohara, Y., Ogasawara, N., Kuroiwa, T. 2003 The phylogenetic position of red algae revealed by multiple nuclear genes from mitochondria-containing eukaryotes and an alternative hypothesis on the origin of plastids. J. Mol. Evol., 56, 485-497. Keywords: eukaryotes; evolution; nuclear genes; outgroup; phylogeny; plantae; plastid; protein-coding genes; red algae Strain(s): 1332, 3377 PubMed: 12664168 DOI: 10.1007/s00239-002-2419-9 Nozaki, H., Matsuzaki, M., Misumi, O., Kuroiwa, H., Hasegawa, M., Higashiyama, T., Shin-i, T., Kohara, Y., Ogasawara, N., Kuroiwa, T. 2004 Cyanobarterial genes transmitted to the nucleus before divergence of red algae in the Chromista. J. Mol. Evol., 59, 103-113. Keywords: Chromista; cyanobacterial nuclear genes; phylogeny; plastids; primary endosymbiosis; secondary endosymbiosis Strain(s): 1332, 3377 PubMed: 15383913 DOI: 10.1007/s00239-003-2611-1 Nozaki, H., Matsuzaki, M., Misumi, O., Kuroiwa, H., Higashiyama, T., Kuroiwa, T. 2005 Phylogenetic implications of the CAD complex from the primitive red alga Cyanidioschyzon merolae (Cyanidiales, Rhodophyta). J. Phycol., 41, 652-657. Keywords: CAD complex; evolution; phylogeny; red algae; pyrimidine biosynthetic cluster Strain(s): 1332, 3377 DOI: 10.1111/j.1529-8817.2005.00079.x Hamana, K. & Niitsu, M. 2006 Cellular polyamines of lower eukaryotes belonging to the phyla Glaucophyta, Rhodophyta, Cryptophyta, Haptophyta and Percolozoa. J. Gen. Appl. Microbiol., 52, 235-240. Keywords: Cryptophyta; Glaucophyta; Haptophyta; Perclozoa; polyamine; Rhodophyta Strain(s): 8, 274, 276, 277, 282, 353, 388, 699, 706, 715, 741, 763, 764, 1016, 1017, 1032, 1036, 1332, 1441, 1456, 1457, 1462, 1463, 1467, 1473, 3377 PubMed: 17116972 DOI: 10.2323/jgam.52.235 Nozaki, H., Takano, H., Misumi, O., Terasawa, K., Matsuzaki, M., Maruyama, S., Nishida, K., Yagisawa, F., Yoshida, Y., Fujiwara, T., Takio, S., Tamura, K., Chung, S. J., Nakamura, S., Kuroiwa, H., Tanaka, K., Sato, N., Kuroiwa, T. 2007 A 100%-complete sequence reveals unusually simple genomic features in the hot-spring red alga Cyanidioschyzon merolae. BMC Biol., 5, 28 (article ID). Strain(s): 1332, 3377 PubMed: 17623057 DOI: 10.1186/1741-7007-5-28 Loganathan, N., Tsai, YC., Mueller-Cajar, O. 2016 Characterization of the heterooligomeric red-type rubisco activase from red algae. Proc. Nati. Acad. Sci. U. S. A., 113, 14019-14024. Keywords: rubisco; activase; photosynthesis; AAA+ proteins; red algae Strain(s): 1332, 4696 PubMed: 27872295 DOI: 10.1073/pnas.1610758113 Cunningham, Jr., F. X., Lee, H., Gantt, E. 2007 Carotenoid biosynthesis in the primitive red alga Cyanidioschyzon merolae. Eukaryot. Cell, 6, 533-545. Strain(s): 1332, 3377 PubMed: 17085635 DOI: 10.1128/EC.00265-06 Ohnuma, M., Kuroiwa, T., Tanaka, K. 2011 Optimization of cryopreservation conditions for the unicellular red alga Cyanidioschyzon merolae. J. Gen. Appl. Micobiol.,, 57, 137-143. Keywords: cryoinjury; cryopreservation; Cyanidioschyzon merolae; unicellular red alga Strain(s): 1332, 3377 PubMed: 21817825 DOI: 10.2323/jgam.57.137 Takaichi, S. 2011 Carotenoids in algae: distributions, biosyntheses and functions. Mar. Drugs, 9, 1101-1118. Keywords: algal phylogeny; biosynthesis of carotenoids; distribution of carotenoids; function of carotenoids; pigment-protein complex Strain(s): 144, 1332, 3377, 4696 PubMed: 21747749 DOI: 10.3390/md9061101 Miyagishima, S., Suzuki, K., Okazaki, K., Kabeya, Y. 2012 Expression of the nucleus-encoded chloroplast division genes and proteins regulated by the algal cell cycle. Mol. Biol. Evol., 29, 2957-2970. Keywords: cell cycle; chloroplast division; endosymbiosis; endosymbiotic gene transfer Strain(s): 296, 484, 547, 1332, 2170, 3377, 4696 PubMed: 22490821 DOI: 10.1093/molbev/mss102 Krupnik, T., Kotabová, E., van Bezouwen, L. S., Mazur, R., Garstka, M., Nixon, P. J., Barber, J., Kaňa, R., Boekema, E. J., Kargul, J. 2013 A reaction center-dependent photoprotection mechanism in a highly robust photosystem II from an extremophilic red alga, Cyanidioschyzon merolae. J. Biol. Chem., 288, 23529-23542. Strain(s): 1332, 4696 DOI: 10.1074/jbc.M113.484659 Takaichi, S., Yokoyama, A., Mochimaru, M., Uchida, H., Murakami, A. 2016 Carotenogenesis diversification in phylogenetic lineages of Rhodophyta. J. Phycol., 52, 329-338. Keywords: alloxanthin; antheraxanthin; carotenogenesis; carotenoid; Cryptophyta; Glaucophyta; lutein; red algae; Rhodophyta; Zeaxanthin Strain(s): 697, 700, 705, 1332, 2137, 2138, 4696 PubMed: 27273528 DOI: 10.1111/jpy.12411 Rahman, D. Y, Sarian, F. D., van WijkM, A., Martinez-Garcia, M., van der Maarel, M. J. E. C. 2017 Thermostable phycocyanin from the red microalga Cyanidioschyzon merolae, a new natural blue food colorant. J. Appl. Phycol., 29, 1233–1239. Keywords: Food colorant; Phycocyanin; Pigments; Red microalga; Cyanidioschyzon merolae Strain(s): 1332, 4696 PubMed: 28572707 DOI: 10.1007/s10811-016-1007-0 Zienkiewicz, M., Krupnik, T., Drożak, A., Golke, A., Romanowska, E. 2017 Transformation of the Cyanidioschyzon merolae chloroplast genome: prospects for understanding chloroplast function in extreme environments. Plant Mol. Biol., 93, 171-183. Keywords: Stable chloroplast transformation; Cyanidioschyzon merolae; Chloramphenicol acetyltransferase; PEG; Biolistic bombardment Strain(s): 1332, 4696 PubMed: 27796719 DOI: 10.1007/s11103-016-0554-8 Krupnik, T., Wasilewska, W., Drożak, A., Romanowska, E., Zienkiewicz, M. 2018 Application of chloroplast promoters of Cyanidioschyzon merolae for exogenous protein expression. Algae, 33, 351-358. Keywords: chloroplast promoters; chloroplast transformation; Cyanidioschyzon merolae Strain(s): 1332, 4696 DOI: 10.4490/algae.2018.33.12.5 Abram, M., Białek, R., Szewczyk, S., Karolczak, J., Gibasiewicz, K., Kargul, J. 2020 Remodeling of excitation energy transfer in extremophilic red algal PSI-LHCI complex during light adaptation. Biochim. Biophys. Acta-Bioenerg., 1861, 148093 (article ID). Keywords: Photosystem I; Light harvesting complex I; Time-resolved fluorescence; Extremophilic red alga Cyanidioschyzon merolae; Light adaptation; Red chlorophylls Strain(s): 1332, 4696 PubMed: 31669460 DOI: 10.1016/j.bbabio.2019.148093 Szewczyk, S., Abram, M., Białek, R., Haniewicz, P., Karolczak, J., Gapiński, J., Kargul, J., Gibasiewicz, K. 2020 On the nature of uncoupled chlorophylls in the extremophilic photosystem I-light harvesting I supercomplex. Biochim. Biophys. Acta-Bioenerg., 1861, 148136 (article ID). Keywords: Biosolar photovoltaic cells; Photosystem I; Light harvesting complex I; Uncoupled chlorophylls; Time-resolved fluorescence; Fluorescence correlation spectroscopy Strain(s): 1332, 4696 PubMed: 31825811 DOI: 10.1016/j.bbabio.2019.148136 Zienkiewicz, M., Krupnik, T., Drożak, A., Kania, K. 2019 PEG-mediated, stable, nuclear and chloroplast transformation of Cyanidioschizon merolae. Bio-protocol, 9, e3355 (article ID). Strain(s): 1332, 3377, 4696 DOI: 10.21769/BioProtoc.3355 Wong, D. K., Grisdale, C. J., Slat, V. A., Rader, S. D., Fast, N. M. 2023 The evolution of pre-mRNA splicing and its machinery revealed by reduced extremophilic red algae. J. Eukaryot. Microbiol., 70, e12927 (article ID). Keywords: Cyanidiales; intron; spliceosome; transcriptome Strain(s): 1332, 4696 PubMed: 35662328 DOI: 10.1111/jeu.12927 Hamana, K., Furuchi, T., Hayashi, H., Uemura, T., Niitsu, M. 2023 Additional polyamine analysis of the algae belonging to the phyla Glaucophyta, Rhodophyta and Chlorophyta. ─Polyamine analysis of algae V─ Microb. Resour. Syst., 39, 33-40. Keywords: alga; Chlorophyta; Glaucophyta; polyamine; Rhodophyta Strain(s): 226, 250, 254, 550, 551, 626, 1298, 1332, 1703, 1836, 2137, 2163, 2164, 2165, 2166, 2252, 2353, 2894, 3377, 3645, 3867, 3891, 3892, 4107, 4390, 4452, 4696 DOI: 10.60369/microresys.39.1_33 |
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