Strain Data

A big image opens when the thumbnail is clicked.(nies-1349-2.jpg)

A big image opens when the thumbnail is clicked.(nies-1349-1.jpg)

Strain number		NIES-1349
Phylum		Heterokontophyta
Class		Bacillariophyceae
Scientific name		Achnanthes kuwaitensis Hendey
Synonym
Former name
Common name		Pennate diatom
Locality (Date of collection)		Morito Beach, Hayama, Kanagawa, Japan (2003-04-19)
Latitude / Longitude		35.273172 / 139.569152
Habitat (Isolation source)		Marine (A polyethylene bag on a beach)
History		< Mayama, Shigeki
Isolator (Date of isolation)		Shono, Naoko (2003-04-22)
Identified by		Mayama, Shigeki
State of strain		Cryopreservation; Unialgal; Clonal; Non-axenic
Culture condition (Preculture condition)		Medium: f/2 Temperature: 20 C Light intensity: 13-15 µmol photons/m²/sec, L/D cycle: 10L:14D Duration: 2 M
Gene information		atub ( AB766057 )
Cell size (min - max)		12 - 40 μm
Organization		Unicellular
Characteristics
Other strain no.
Remarks		Cryopreserved
Movie

Related strain information (Large number of orders and same genus or species)
Strain number	Scientific name	Common name	Habitat (Isolation source)	Characteristics
NIES-330	Achnanthes subconstricta	Pennate diatom	Marine (Seawater)

Related strain information (Used in same reference)
Strain number	Scientific name	Common name	Habitat (Isolation source)	Characteristics
NIES-766	Cryptomonas paramaecium		Brackish water (Lake water)	Heterotrophic ; Osmotrophic
NIES-2369	Corisphaera gracilis	Coccolithophore	Marine
NIES-1004	Chroomonas coerulea		Freshwater (River water)	Planktonic
NIES-2332	Rhodomonas sp.		Marine (Sediment)	Genome decoded strain (Suzuki et al. 2022)
NIES-2843	Skeletonema pseudocostatum	Centric diatom	Marine (Seawater)	Red tide (Yamada et al. 2010) ; Planktonic

Reference
Kamikawa, R., Sanchez-Perez, G. F., Sako, Y., Roger, A. J., Inagaki, Y. 2009 Expanded phylogenies of canonical and non-canonical types of methionine adenosyltransferase reveal a complex history of these gene families in eukaryotes. Mol. Phylogenet. Evol., 53, 565-570. Keywords: Methionine adenosyltransferase; Lateral gene transfer; Diaoms; Aureococcus; Haptophytes; Cryptomonads Strain(s): 17, 350, 417, 534, 586, 1045, 1349 PubMed: 19577655 DOI: 10.1016/j.ympev.2009.06.016 Kamikawa, R., Brown, M. W., Nishimura, Y., Sako, Y., Heiss, A. A., Yubuki, N., Gawryluk, R., Simpson, A. G. B., Roger, A. J., Hashimoto, T., Inagaki, Y. 2013 Parallel re-modeling of EF-1α function: divergent EF-1α genes co-occur with EFL genes in diverse distantly related eukaryotes. BMC Evol. Biol., 13, 131 (article ID). Keywords: Diatoms; Differential Gene Loss; EF-1α; EFL; Functional Remodeling; Goniomonas; Pythium; Spizellomyces; Thecamonas Strain(s): 417, 534, 1349, 1371, 1373, 1374 PubMed: 23800323 DOI: 10.1186/1471-2148-13-131 Mitani, E., Nakayama, F., Matsuwaki, I., Ichi, I., Kawabata, A., Kawachi, M., Kato, M. 2017 Fatty acid composition profiles of 235 strains of three microalgal divisions within the NIES Microbial Culture Collection. Microb. Resour. Syst., 33, 19-29. Keywords: Cryptophyta; docosahexaenoic acid; eicosapentaenoic acid; fatty acid; Haptophyta; Heterokontophyta; microalgae Strain(s): 1, 8, 9, 14, 15, 17, 71, 115, 223, 225, 233, 234, 265, 274, 275, 276, 277, 278, 279, 280, 281, 282, 284, 293, 323, 324, 330, 333, 345, 347, 348, 350, 353, 372, 377, 388, 391, 395, 407, 408, 409, 413, 414, 417, 461, 462, 466, 487, 534, 548, 553, 556, 557, 558, 559, 560, 562, 587, 588, 589, 590, 603, 605, 622, 623, 695, 696, 697, 698, 699, 700, 701, 702, 703, 704, 705, 706, 707, 708, 710, 711, 712, 713, 714, 715, 716, 741, 765, 766, 805, 837, 997, 1001, 1002, 1003, 1004, 1005, 1006, 1007, 1009, 1011, 1016, 1017, 1044, 1045, 1046, 1047, 1302, 1303, 1324, 1330, 1339, 1340, 1349, 1353, 1370, 1375, 1376, 1379, 1383, 1384, 1385, 1386, 1387, 1391, 1392, 1393, 1395, 1398, 1399, 1400, 1401, 1699, 1700, 1730, 1813, 1815, 1816, 1826, 1827, 1831, 1862, 1863, 1864, 1865, 1874, 1963, 1964, 1965, 1974, 1975, 1976, 2142, 2143, 2144, 2145, 2147, 2148, 2300, 2331, 2332, 2351, 2363, 2364, 2365, 2369, 2370, 2376, 2506, 2533, 2534, 2535, 2536, 2537, 2590, 2633, 2668, 2689, 2690, 2691, 2693, 2694, 2696, 2697, 2707, 2716, 2717, 2718, 2720, 2722, 2723, 2725, 2726, 2729, 2730, 2731, 2732, 2770, 2771, 2772, 2773, 2839, 2840, 2841, 2842, 2843, 2844, 2859, 2872, 2878, 2890, 2899, 3391, 3689, 3690, 3691 DOI: 10.60369/microresys.33.1_19 Nemoto, M. 2021 A comparative gene analysis reveals a diatom-specific SET domain protein family. Scientific Reports of the Faculty of Agriculture, Okayama University, 110, 1-6 (in Japanese with English summary). Keywords: Biomineralization; Diatom; Silica; Protein Strain(s): 487, 1349

Reference

Kamikawa, R., Sanchez-Perez, G. F., Sako, Y., Roger, A. J., Inagaki, Y. 2009 Expanded phylogenies of canonical and non-canonical types of methionine adenosyltransferase reveal a complex history of these gene families in eukaryotes. Mol. Phylogenet. Evol., 53, 565-570.
Keywords: Methionine adenosyltransferase; Lateral gene transfer; Diaoms; Aureococcus; Haptophytes; Cryptomonads
Strain(s): 17, 350, 417, 534, 586, 1045, 1349
PubMed: 19577655
DOI: 10.1016/j.ympev.2009.06.016

Kamikawa, R., Brown, M. W., Nishimura, Y., Sako, Y., Heiss, A. A., Yubuki, N., Gawryluk, R., Simpson, A. G. B., Roger, A. J., Hashimoto, T., Inagaki, Y. 2013 Parallel re-modeling of EF-1α function: divergent EF-1α genes co-occur with EFL genes in diverse distantly related eukaryotes. BMC Evol. Biol., 13, 131 (article ID).
Keywords: Diatoms; Differential Gene Loss; EF-1α; EFL; Functional Remodeling; Goniomonas; Pythium; Spizellomyces; Thecamonas
Strain(s): 417, 534, 1349, 1371, 1373, 1374
PubMed: 23800323
DOI: 10.1186/1471-2148-13-131

Mitani, E., Nakayama, F., Matsuwaki, I., Ichi, I., Kawabata, A., Kawachi, M., Kato, M. 2017 Fatty acid composition profiles of 235 strains of three microalgal divisions within the NIES Microbial Culture Collection. Microb. Resour. Syst., 33, 19-29.
Keywords: Cryptophyta; docosahexaenoic acid; eicosapentaenoic acid; fatty acid; Haptophyta; Heterokontophyta; microalgae
Strain(s): 1, 8, 9, 14, 15, 17, 71, 115, 223, 225, 233, 234, 265, 274, 275, 276, 277, 278, 279, 280, 281, 282, 284, 293, 323, 324, 330, 333, 345, 347, 348, 350, 353, 372, 377, 388, 391, 395, 407, 408, 409, 413, 414, 417, 461, 462, 466, 487, 534, 548, 553, 556, 557, 558, 559, 560, 562, 587, 588, 589, 590, 603, 605, 622, 623, 695, 696, 697, 698, 699, 700, 701, 702, 703, 704, 705, 706, 707, 708, 710, 711, 712, 713, 714, 715, 716, 741, 765, 766, 805, 837, 997, 1001, 1002, 1003, 1004, 1005, 1006, 1007, 1009, 1011, 1016, 1017, 1044, 1045, 1046, 1047, 1302, 1303, 1324, 1330, 1339, 1340, 1349, 1353, 1370, 1375, 1376, 1379, 1383, 1384, 1385, 1386, 1387, 1391, 1392, 1393, 1395, 1398, 1399, 1400, 1401, 1699, 1700, 1730, 1813, 1815, 1816, 1826, 1827, 1831, 1862, 1863, 1864, 1865, 1874, 1963, 1964, 1965, 1974, 1975, 1976, 2142, 2143, 2144, 2145, 2147, 2148, 2300, 2331, 2332, 2351, 2363, 2364, 2365, 2369, 2370, 2376, 2506, 2533, 2534, 2535, 2536, 2537, 2590, 2633, 2668, 2689, 2690, 2691, 2693, 2694, 2696, 2697, 2707, 2716, 2717, 2718, 2720, 2722, 2723, 2725, 2726, 2729, 2730, 2731, 2732, 2770, 2771, 2772, 2773, 2839, 2840, 2841, 2842, 2843, 2844, 2859, 2872, 2878, 2890, 2899, 3391, 3689, 3690, 3691
DOI: 10.60369/microresys.33.1_19

Nemoto, M. 2021 A comparative gene analysis reveals a diatom-specific SET domain protein family. Scientific Reports of the Faculty of Agriculture, Okayama University, 110, 1-6 (in Japanese with English summary).
Keywords: Biomineralization; Diatom; Silica; Protein
Strain(s): 487, 1349

Unauthorized copying and replication of text, images, and tables in our homepage, are prohibited.