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Strain Data
| Strain number | NIES-1390 | |||
|---|---|---|---|---|
| Phylum | Excavata incertae sedis | |||
| Class | Incertae sedis | |||
| Scientific name | Tsukubamonas globosa Yabuki et al. | |||
| Synonym | ||||
| Former name | ||||
| Common name | ||||
| Locality (Date of collection) | Hyotaro-ike Pond, Tennoudai, Tsukuba, Ibaraki, Japan (2003-01-16) | |||
| Latitude / Longitude | 36.116587 / 140.09765 | |||
| Habitat (Isolation source) | Freshwater (Lake water) | |||
| History | < TKB; | |||
| Isolator (Date of isolation) | Yubuki, Naoji (2003-03-02) | |||
| Identified by | Yabuki, Akinori | |||
| State of strain | Subculture; Unialgal; Clonal; Non-axenic | |||
|
Culture condition (Preculture condition) |
Medium:
URO + YT (1/10) + Wheat
Temperature: 20 C Duration: 20 D |
|||
| Gene information | 18S rRNA ( AB576851 ) , EF2 ( AB576859 ) , hsp90 ( AB576858 ) , beta-tubulin ( AB576857 AB576856 ) , alpha-tubulin ( AB576855 ) , actin ( AB576854 AB576853 AB576852 ) | |||
| Cell size (min - max) | ||||
| Organization | ||||
| Characteristics | Heterotrophic ; Planktonic ; Authentic strain (Yabuki et al. 2011) | |||
| Other strain no. | Other strain no. : TKB-055 (NY0136) | |||
| Remarks | Unstable | |||
| Movie | ||||
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Related strain information
(Used in same reference)
|
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|---|---|---|---|---|
| Strain number | Scientific name | Common name | Habitat (Isolation source) | Characteristics |
NIES-1330
|
Prymnesium calathiferum | Marine (Sand) | ||
|
NIES-1438 |
Bicosoeca sp. | Marine (Seawater) | Heterotrophic ; Phagotrophic ; Benthic | |
|
NIES-3374 |
Chlorogonium capillatum | Green alga | Freshwater (Pond water) | Mixotrophic ; Osmotrophic ; Planktonic ; Prey for protozoa (flagellates, ciliates, amoebids, heliozoans) |
NIES-2433
|
Norrisiella sphaerica | Marine (Seaweed) | ||
NIES-1441
|
Percolomonas sp. | Marine (Seawater) | Heterotrophic ; Phagotrophic | |
| Reference |
|---|
|
Yabuki, A., Nakayama, T., Yubuki, N., Hashimoto, T., Ishida, K-I. Inagaki, Y.
2011
Tsukubamonas globosa n. gen., n. sp., a novel excavate flagellate possibly holding a key for the early evolution in "Discoba".
J. Eucaryot. Microbiol.,
58,
319-331.
Keywords: Flagellar apparatus; heteroloboseans; jakobids; multigene phylogeny; taxonomy; ultrastructure Strain(s): 1390 PubMed: 21569159 DOI: 10.1111/j.1550-7408.2011.00552.x Kashiyama, Y. et al. 2019 Taming chlorophylls by early eukaryotes underpinned algal interactions and the diversification of the eukaryotes on the oxygenated Earth. ISME J., 13, 1899-1910. Strain(s): 8, 254, 274, 286, 324, 331, 353, 381, 494, 623, 624, 997, 1012, 1013, 1015, 1320, 1330, 1333, 1334, 1335, 1372, 1377, 1388, 1390, 1396, 1397, 1408, 1438, 1439, 1441, 1964, 2008, 2142, 2144, 2149, 2300, 2305, 2325, 2433, 2498, 2502, 2566, 2584, 2586, 2589, 2590, 2677, 2878, 3356, 3374, 3775, 4477, 4478 PubMed: 30809012 DOI: 10.1038/s41396-019-0377-0 Harada, R., Hirakawa, Y., Yabuki, A., Kim, E., Yazaki, E., Kamikawa, R., Nakano, K., Eliáš, M., Inagaki, Y. 2024 Encyclopedia of family a DNA polymerases localized in organelles: Evolutionary contribution of bacteria including the proto-mitochondrion. Mol. Biol. Evol., 41, msae01 (article ID). Keywords: DNA polymerase; endosymbiosis; lateral gene transfer; last eukaryotic common ancestor; mitochondria, plastids Strain(s): 1390 PubMed: 38271287 DOI: 10.1093/molbev/msae014 |
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