Strain Data

A big image opens when the thumbnail is clicked.(nies-2087.jpg)

Strain number		NIES-2087
Phylum		Cyanophyta
Class		Cyanophyceae
Scientific name		Prochlorococcus marinus S.W.Chisholm, S.L.Frankel, R.Goericke, R.J.Olson, B.Palenik, J.B.Waterbury, L.West-Johnsrud & E.R.Zettler
Synonym
Former name
Common name		Blue-green alga ; Cyanobacteria ; Picoplankton
Locality (Date of collection)		East Mediterranean Sea
Latitude / Longitude		35 / 20
Habitat (Isolation source)		Marine (Seawater)
History		< Kawachi, Masanobu < CCMP
Isolator (Date of isolation)		Vaulot, D. (1991-03-01)
Identified by		Vaulot, D.
State of strain		Cryopreservation; Unialgal; Clonal; Non-axenic
Culture condition (Preculture condition)		Medium: PRO-99 Temperature: 20 C Light intensity: 7-11 µmol photons/m²/sec, L/D cycle: 10L:14D Duration: 3 M
Gene information		Whole-genome ( BX548174 )
Cell size (min - max)		1 - 3 μm
Organization		Unicellular; Non-flagellate
Characteristics		Picoplankton ; Genome decoded strain
Other strain no.		Other collection strain no. : CCMP1986; CCMP1378 Other strain no. : MED4
Remarks		Cryopreserved; Unstable
Movie

Related strain information (Large number of orders and same genus or species)
Strain number	Scientific name	Common name	Habitat (Isolation source)	Characteristics
NIES-2884	Prochlorococcus sp.	Blue-green alga ; Cyanobacteria ; Picoplankton	Marine (Seawater)	Picoplankton ; Clade: High Light - HLII
NIES-2885	Prochlorococcus sp.	Blue-green alga ; Cyanobacteria ; Picoplankton	Marine (Seawater)	Picoplankton ; Clade: High Light - HLI
NIES-2886	Prochlorococcus sp.	Blue-green alga ; Cyanobacteria ; Picoplankton	Marine (Seawater)	Picoplankton ; Clade: High Light - HLII
NIES-2887	Prochlorococcus sp.	Blue-green alga ; Cyanobacteria ; Picoplankton	Marine (Seawater)	Picoplankton ; Clade: Low Light - LLIV ; Genome decoded strain (Rocap et al. 2013)
NIES-2086	Prochlorococcus marinus	Blue-green alga ; Cyanobacteria ; Picoplankton	Marine (Seawater)	Picoplankton

Related strain information (Used in same reference)
Strain number	Scientific name	Common name	Habitat (Isolation source)	Characteristics
NIES-981	Cyanobium sp.	Blue-green alga ; Cyanobacteria	Marine (Tidal flat sediment)	Test strain (Yamagishi et al. 2016) ; Genome decoded strain (Yamaguchi et al. 2016) ; Synechococcus clade group K (Suzuki et al. 2022)
NIES-3733	Cuspidothrix issatschenkoi	Blue-green alga ; Cyanobacteria	Freshwater (Lake water)
NIES-512	Pseudanabaena foetida	Blue-green alga ; Cyanobacteria	Freshwater (Pond water)	Offensive odor ; Test strain (Nagai, T., 2016) ; 2-MIB production (Iwase et al. 2010) ; Type strain (Tuji & Niiyama 2016)
NIES-593	Hydrococcus rivularis	Blue-green alga ; Cyanobacteria	Hot spring (Water)	Benthic ; Genome decoded strain (Zhu et al. 2017)
NIES-846	Tychonema bourrellyi	Blue-green alga ; Cyanobacteria	Freshwater	Cyanobacterial water bloom (aoko) ; Planktonic ; Type strain

Reference
Kobayashi, A., Sekiguchi, Y., Oroguchi, T., Okajima, K., Fukuda, A., Oide,, M., Yamamoto, M., Nakasako, M. 2016 Specimen preparation for cryogenic coherent X-ray diffraction imaging of biological cells and cellular organelles by using the X-ray free-electron laser at SACLA. J. Synchrot. Radiat., 23, 975-989. Keywords: coherent X-ray diffraction imaging; X-ray free-electron laser; frozen-hydrated non-crystalline specimens; cryogenic X-ray diffraction experiment; structures of cells and cellular organelles Strain(s): 2087 PubMed: 27359147 DOI: 10.1107/S1600577516007736 Komatsu, H., Wada, K., Kanjoh, T., Miyashita, H., Sato, M., Kawachi, M., Kobayashi, M. 2016 Unique chlorophylls in picoplankton Prochlorococcus sp. “Physicochemical properties of divinyl chlorophylls, and the discovery of monovinyl chlorophyll b as well as divinyl chlorophyll b in the species Prochlorococcus NIES-2086.” Photosynth. Res., 130, 445-467. Keywords: Chlorophyll; Divinyl chlorophyll; Pheophytin; Photosynthesis; Prochlorococcus Strain(s): 2086, 2087, 2884, 3376 PubMed: 27334004 DOI: 10.1007/s11120-016-0283-5 Hamana, K., Furuchi, T., Hayashi, H., Niitsu, M. 2016 Additional analysis of cyanobacterial polyamines ─ Distributions of spermidine, homospermidine, spermine, and thermospermine within the phylum Cyanobacteria. ─ Microb. Resour. Syst., 32, 179-186. Keywords: cyanobacteria; homospermidine; polyamine; thermospermine Strain(s): 2086, 2087, 2134, 2412, 2539, 3373 DOI: 10.60369/microresys.32.2_179 Sekiguchi, Y., Kobayashi, A., Takayama, Y., Oide, M., Fukuda, A., Yamamoto, Y., Okajima, K., Oroguchi, T., Hirakawa, T., Inui, Y., Matsunaga, S., Yamamoto, M., Nakasako, M. 2018 Coherent X-ray Diffraction Imaging of Cyanidioschyzon merolae. In Cyanidioschyzon merolae: A New Model Eukaryote for Cell and Organelle Biology, Eds. by Kuroiwa, T., Miyagishima, S., Matsunaga, S., Sato, N., Nozaki, H., Tanaka, K., Misumi, O., Springer Singapore, pp. 153-173. Strain(s): 2087 DOI: 10.1007/978-981-10-6101-1_10 Asukabe, H., Akahori, S., Ueno, E., Nakayama, T., Yamashita, R., Arii, S., Harada, K., Imanishi, S. Y. 2020 Cyanobacterial classification with the toxicity using MALDI Biotyper. J. Am. Soc. Mass Spectrom., 31, 1572-1578. Keywords: cyanobacteria; MALDI Biotyper; microcystins; profiling Strain(s): 27, 39, 42, 73, 81, 87, 89, 100, 101, 102, 103, 104, 105, 107, 111, 112, 207, 208, 230, 266, 298, 416, 433, 478, 510, 512, 515, 592, 593, 604, 611, 808, 809, 835, 843, 846, 847, 905, 928, 931, 932, 945, 981, 989, 1025, 1043, 1058, 1061, 1064, 1068, 1069, 1071, 1076, 1085, 1099, 1101, 1105, 1113, 1115, 1126, 1133, 1134, 1135, 1144, 1157, 1215, 1642, 1643, 1652, 1668, 1672, 1673, 1677, 1678, 1698, 2087, 2131, 2412, 2665, 3708, 3733, 3734, 3736, 3755, 3756, 3757 PubMed: 32501712 DOI: 10.1021/jasms.0c00148 Kobayashi, A., Takayama, Y., Hirakawa, T., Okajima, K., Oide, M., Oroguchi, T., Inui, Y., Yamamoto, M., Matsunaga, S., Nakasako, M. 2021 Common architectures in cyanobacteria Prochlorococcus cells visualized by X-ray diffraction imaging using X-ray free electron laser. Sci Rep, 11, 3877 (article ID). Strain(s): 2087 PubMed: 33594220 DOI: 10.1038/s41598-021-83401-y

Reference

Kobayashi, A., Sekiguchi, Y., Oroguchi, T., Okajima, K., Fukuda, A., Oide,, M., Yamamoto, M., Nakasako, M. 2016 Specimen preparation for cryogenic coherent X-ray diffraction imaging of biological cells and cellular organelles by using the X-ray free-electron laser at SACLA. J. Synchrot. Radiat., 23, 975-989.
Keywords: coherent X-ray diffraction imaging; X-ray free-electron laser; frozen-hydrated non-crystalline specimens; cryogenic X-ray diffraction experiment; structures of cells and cellular organelles
Strain(s): 2087
PubMed: 27359147
DOI: 10.1107/S1600577516007736

Komatsu, H., Wada, K., Kanjoh, T., Miyashita, H., Sato, M., Kawachi, M., Kobayashi, M. 2016 Unique chlorophylls in picoplankton Prochlorococcus sp. “Physicochemical properties of divinyl chlorophylls, and the discovery of monovinyl chlorophyll b as well as divinyl chlorophyll b in the species Prochlorococcus NIES-2086.” Photosynth. Res., 130, 445-467.
Keywords: Chlorophyll; Divinyl chlorophyll; Pheophytin; Photosynthesis; Prochlorococcus
Strain(s): 2086, 2087, 2884, 3376
PubMed: 27334004
DOI: 10.1007/s11120-016-0283-5

Hamana, K., Furuchi, T., Hayashi, H., Niitsu, M. 2016 Additional analysis of cyanobacterial polyamines ─ Distributions of spermidine, homospermidine, spermine, and thermospermine within the phylum Cyanobacteria. ─ Microb. Resour. Syst., 32, 179-186.
Keywords: cyanobacteria; homospermidine; polyamine; thermospermine
Strain(s): 2086, 2087, 2134, 2412, 2539, 3373
DOI: 10.60369/microresys.32.2_179

Sekiguchi, Y., Kobayashi, A., Takayama, Y., Oide, M., Fukuda, A., Yamamoto, Y., Okajima, K., Oroguchi, T., Hirakawa, T., Inui, Y., Matsunaga, S., Yamamoto, M., Nakasako, M. 2018 Coherent X-ray Diffraction Imaging of Cyanidioschyzon merolae. In Cyanidioschyzon merolae: A New Model Eukaryote for Cell and Organelle Biology, Eds. by Kuroiwa, T., Miyagishima, S., Matsunaga, S., Sato, N., Nozaki, H., Tanaka, K., Misumi, O., Springer Singapore, pp. 153-173.
Strain(s): 2087
DOI: 10.1007/978-981-10-6101-1_10

Asukabe, H., Akahori, S., Ueno, E., Nakayama, T., Yamashita, R., Arii, S., Harada, K., Imanishi, S. Y. 2020 Cyanobacterial classification with the toxicity using MALDI Biotyper. J. Am. Soc. Mass Spectrom., 31, 1572-1578.
Keywords: cyanobacteria; MALDI Biotyper; microcystins; profiling
Strain(s): 27, 39, 42, 73, 81, 87, 89, 100, 101, 102, 103, 104, 105, 107, 111, 112, 207, 208, 230, 266, 298, 416, 433, 478, 510, 512, 515, 592, 593, 604, 611, 808, 809, 835, 843, 846, 847, 905, 928, 931, 932, 945, 981, 989, 1025, 1043, 1058, 1061, 1064, 1068, 1069, 1071, 1076, 1085, 1099, 1101, 1105, 1113, 1115, 1126, 1133, 1134, 1135, 1144, 1157, 1215, 1642, 1643, 1652, 1668, 1672, 1673, 1677, 1678, 1698, 2087, 2131, 2412, 2665, 3708, 3733, 3734, 3736, 3755, 3756, 3757
PubMed: 32501712
DOI: 10.1021/jasms.0c00148

Kobayashi, A., Takayama, Y., Hirakawa, T., Okajima, K., Oide, M., Oroguchi, T., Inui, Y., Yamamoto, M., Matsunaga, S., Nakasako, M. 2021 Common architectures in cyanobacteria Prochlorococcus cells visualized by X-ray diffraction imaging using X-ray free electron laser. Sci Rep, 11, 3877 (article ID).
Strain(s): 2087
PubMed: 33594220
DOI: 10.1038/s41598-021-83401-y

Unauthorized copying and replication of text, images, and tables in our homepage, are prohibited.