Strain Data

Strain number		NIES-2364
Phylum		Heterokontophyta
Class		Bacillariophyceae
Scientific name		Cyclotella meneghiniana Kützing
Synonym
Former name
Common name		Centric diatom
Locality (Date of collection)		Meguro River, Nakameguro, Meguro-ku Tokyo, Japan (2006-07-01)
Latitude / Longitude		35.64111111 / 139.70277777
Habitat (Isolation source)		Brackish water (River water)
History		< Shirokawa, Yuka
Isolator (Date of isolation)		Shirokawa, Yuka (2006-07-10)
Identified by		Mayama, Shigeki
State of strain		Subculture; Unialgal; Clonal; Non-axenic
Culture condition (Preculture condition)		Medium: CSi Temperature: 20 C Light intensity: 12-15 µmol photons/m²/sec, L/D cycle: 10L:14D Duration: 2 M
Gene information		28S rRNA ( JN854149 )
Cell size (min - max)
Organization		Unicellular
Characteristics		Euryhaline
Other strain no.		Other strain no. : MG
Remarks
Movie

Related strain information (Large number of orders and same genus or species)
Strain number	Scientific name	Common name	Habitat (Isolation source)	Characteristics
NIES-804	Cyclotella meneghiniana	Centric diatom	Freshwater (River water)
NIES-2365	Cyclotella meneghiniana	Centric diatom	Freshwater (Lake water)	Euryhaline
NIES-805	Cyclotella meneghiniana	Centric diatom	Freshwater (River water)
NIES-2363	Cyclotella meneghiniana	Centric diatom	Brackish water (River water)	Euryhaline
NIES-803	Cyclotella meneghiniana	Centric diatom	Freshwater (River water)

Related strain information (Whose relevance due to simultaneous purchases and other information is inferred by AI)
Strain number	Scientific name	Common name	Habitat (Isolation source)	Characteristics
NIES-3854	Cyclotella atomus	Centric diatom	Freshwater (Lake water)

Related strain information (Used in same reference)
Strain number	Scientific name	Common name	Habitat (Isolation source)	Characteristics
NIES-2144	Poterioochromonas malhamensis		Freshwater (Stone)	Mixotrophic ; Phagotrophic
NIES-2843	Skeletonema pseudocostatum	Centric diatom	Marine (Seawater)	Red tide (Yamada et al. 2010) ; Planktonic
NIES-2331	Chroomonas debatzensis		Brackish water (Sediment)	Genome decoded strain (Suzuki et al. 2022)
NIES-1699	Chrysophaeum taylorii		Marine (Seawater)	Genome decoded strain (Davison et al. 2023)
NIES-2716	Hemiselmis andersenii		Marine (Seawater)	Genome decoded strain (Suzuki et al. 2022)

Reference
Shirokawa, Y., Karino, K., Mayama, S. 2012 Developmental plasticity and genotype–environment interactions influence valve morphology in the Cyclotella meneghiniana species complex (Bacillariophyceae). Eur. J. Phycol., 47, 245-253. Keywords: Cyclotella meneghiniana; developmental plasticity; diatoms; fultoportulae; genotype–environment interaction; salinity; strutted processes Strain(s): 2363, 2364, 2365 DOI: 10.1080/09670262.2012.697580 Shirokawa, Y., Shimada, M. 2013 Sex allocation pattern of the diatom Cyclotella meneghiniana. Proc. R. Soc. Lond. Ser. B-Biol. Sci., 280, 20130503 (article ID). Keywords: sex allocation; spilit sex ratio; size advantage model; fertility insurance; unicellular organism; microfluidic system Strain(s): 2364 PubMed: 23760641 DOI: 10.1098/rspb.2013.0503 Shirokawa, Y. & Shimada, M. 2016 Cytoplasmic inheritance of parent-offspring cell structure in the clonal diatom Cyclotella meneghiniana. Proc. R. Soc. B-Biol. Sci., B283, 20161632 (article ID). Keywords: centric diatom, cytoplasmic inheritance; non-genetic heritability; quantitative genetics; structural inheritance; rapid evolution Strain(s): 2364 PubMed: 27807268 DOI: 10.1098/rspb.2016.1632 Mitani, E., Nakayama, F., Matsuwaki, I., Ichi, I., Kawabata, A., Kawachi, M., Kato, M. 2017 Fatty acid composition profiles of 235 strains of three microalgal divisions within the NIES Microbial Culture Collection. Microb. Resour. Syst., 33, 19-29. Keywords: Cryptophyta; docosahexaenoic acid; eicosapentaenoic acid; fatty acid; Haptophyta; Heterokontophyta; microalgae Strain(s): 1, 8, 9, 14, 15, 17, 71, 115, 223, 225, 233, 234, 265, 274, 275, 276, 277, 278, 279, 280, 281, 282, 284, 293, 323, 324, 330, 333, 345, 347, 348, 350, 353, 372, 377, 388, 391, 395, 407, 408, 409, 413, 414, 417, 461, 462, 466, 487, 534, 548, 553, 556, 557, 558, 559, 560, 562, 587, 588, 589, 590, 603, 605, 622, 623, 695, 696, 697, 698, 699, 700, 701, 702, 703, 704, 705, 706, 707, 708, 710, 711, 712, 713, 714, 715, 716, 741, 765, 766, 805, 837, 997, 1001, 1002, 1003, 1004, 1005, 1006, 1007, 1009, 1011, 1016, 1017, 1044, 1045, 1046, 1047, 1302, 1303, 1324, 1330, 1339, 1340, 1349, 1353, 1370, 1375, 1376, 1379, 1383, 1384, 1385, 1386, 1387, 1391, 1392, 1393, 1395, 1398, 1399, 1400, 1401, 1699, 1700, 1730, 1813, 1815, 1816, 1826, 1827, 1831, 1862, 1863, 1864, 1865, 1874, 1963, 1964, 1965, 1974, 1975, 1976, 2142, 2143, 2144, 2145, 2147, 2148, 2300, 2331, 2332, 2351, 2363, 2364, 2365, 2369, 2370, 2376, 2506, 2533, 2534, 2535, 2536, 2537, 2590, 2633, 2668, 2689, 2690, 2691, 2693, 2694, 2696, 2697, 2707, 2716, 2717, 2718, 2720, 2722, 2723, 2725, 2726, 2729, 2730, 2731, 2732, 2770, 2771, 2772, 2773, 2839, 2840, 2841, 2842, 2843, 2844, 2859, 2872, 2878, 2890, 2899, 3391, 3689, 3690, 3691 DOI: 10.60369/microresys.33.1_19 Shirokawa, Y. & Shimada, M. 2020 Synchronized emergence under diatom sperm competition. Proc. R. Soc. Lond. Ser. B-Biol. Sci., 287, 20201074 (article ID). Keywords: sexual differentiation; evolutionary game theory; synchronization; centric diatom; spem competition Strain(s): 2364 PubMed: 33023410 DOI: 10.1098/rspb.2020.1074 Zhang, X., Ohtsuki, H., Makino, W., Kato, Y., Watanabe, H., Urabe, J. 2021 Variations in effects of ectosymbiotic microbes on the growth rates among different species and genotypes of Daphnia fed different algal diets. Ecol. Res., 36, 303-312. Strain(s): 2364 DOI: 10.1111/1440-1703.12194

Reference

Shirokawa, Y., Karino, K., Mayama, S. 2012 Developmental plasticity and genotype–environment interactions influence valve morphology in the Cyclotella meneghiniana species complex (Bacillariophyceae). Eur. J. Phycol., 47, 245-253.
Keywords: Cyclotella meneghiniana; developmental plasticity; diatoms; fultoportulae; genotype–environment interaction; salinity; strutted processes
Strain(s): 2363, 2364, 2365
DOI: 10.1080/09670262.2012.697580

Shirokawa, Y., Shimada, M. 2013 Sex allocation pattern of the diatom Cyclotella meneghiniana. Proc. R. Soc. Lond. Ser. B-Biol. Sci., 280, 20130503 (article ID).
Keywords: sex allocation; spilit sex ratio; size advantage model; fertility insurance; unicellular organism; microfluidic system
Strain(s): 2364
PubMed: 23760641
DOI: 10.1098/rspb.2013.0503

Shirokawa, Y. & Shimada, M. 2016 Cytoplasmic inheritance of parent-offspring cell structure in the clonal diatom Cyclotella meneghiniana. Proc. R. Soc. B-Biol. Sci., B283, 20161632 (article ID).
Keywords: centric diatom, cytoplasmic inheritance; non-genetic heritability; quantitative genetics; structural inheritance; rapid evolution
Strain(s): 2364
PubMed: 27807268
DOI: 10.1098/rspb.2016.1632

Mitani, E., Nakayama, F., Matsuwaki, I., Ichi, I., Kawabata, A., Kawachi, M., Kato, M. 2017 Fatty acid composition profiles of 235 strains of three microalgal divisions within the NIES Microbial Culture Collection. Microb. Resour. Syst., 33, 19-29.
Keywords: Cryptophyta; docosahexaenoic acid; eicosapentaenoic acid; fatty acid; Haptophyta; Heterokontophyta; microalgae
Strain(s): 1, 8, 9, 14, 15, 17, 71, 115, 223, 225, 233, 234, 265, 274, 275, 276, 277, 278, 279, 280, 281, 282, 284, 293, 323, 324, 330, 333, 345, 347, 348, 350, 353, 372, 377, 388, 391, 395, 407, 408, 409, 413, 414, 417, 461, 462, 466, 487, 534, 548, 553, 556, 557, 558, 559, 560, 562, 587, 588, 589, 590, 603, 605, 622, 623, 695, 696, 697, 698, 699, 700, 701, 702, 703, 704, 705, 706, 707, 708, 710, 711, 712, 713, 714, 715, 716, 741, 765, 766, 805, 837, 997, 1001, 1002, 1003, 1004, 1005, 1006, 1007, 1009, 1011, 1016, 1017, 1044, 1045, 1046, 1047, 1302, 1303, 1324, 1330, 1339, 1340, 1349, 1353, 1370, 1375, 1376, 1379, 1383, 1384, 1385, 1386, 1387, 1391, 1392, 1393, 1395, 1398, 1399, 1400, 1401, 1699, 1700, 1730, 1813, 1815, 1816, 1826, 1827, 1831, 1862, 1863, 1864, 1865, 1874, 1963, 1964, 1965, 1974, 1975, 1976, 2142, 2143, 2144, 2145, 2147, 2148, 2300, 2331, 2332, 2351, 2363, 2364, 2365, 2369, 2370, 2376, 2506, 2533, 2534, 2535, 2536, 2537, 2590, 2633, 2668, 2689, 2690, 2691, 2693, 2694, 2696, 2697, 2707, 2716, 2717, 2718, 2720, 2722, 2723, 2725, 2726, 2729, 2730, 2731, 2732, 2770, 2771, 2772, 2773, 2839, 2840, 2841, 2842, 2843, 2844, 2859, 2872, 2878, 2890, 2899, 3391, 3689, 3690, 3691
DOI: 10.60369/microresys.33.1_19

Shirokawa, Y. & Shimada, M. 2020 Synchronized emergence under diatom sperm competition. Proc. R. Soc. Lond. Ser. B-Biol. Sci., 287, 20201074 (article ID).
Keywords: sexual differentiation; evolutionary game theory; synchronization; centric diatom; spem competition
Strain(s): 2364
PubMed: 33023410
DOI: 10.1098/rspb.2020.1074

Zhang, X., Ohtsuki, H., Makino, W., Kato, Y., Watanabe, H., Urabe, J. 2021 Variations in effects of ectosymbiotic microbes on the growth rates among different species and genotypes of Daphnia fed different algal diets. Ecol. Res., 36, 303-312.
Strain(s): 2364
DOI: 10.1111/1440-1703.12194

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