Strain Data

Strain number		NIES-2682
Phylum		Heterokontophyta
Class		Bolidophyceae
Scientific name		Triparma pacifica (Guillou & Chrétiennot-Dinet) Ichinomiya & Lopes dos Santos
Synonym		Bolidomonas pacifica L.Guillou & M.-J.Chrétiennot-Dinet
Former name		Bolidomonas pacifica L.Guillou & M.-J.Chrétiennot-Dinet
Common name
Locality (Date of collection)		Equatorial Pacific Ocean (Depth -15m) (1994-11-11)
Latitude / Longitude
Habitat (Isolation source)		Marine (Seawater)
History		< RCC (2010);
Isolator (Date of isolation)		Vaulot, Daniel (1994-11-11)
Identified by		Guillou, L.
State of strain		Subculture; Unialgal; Clonal; Non-axenic
Culture condition (Preculture condition)		Medium: ESM ; MNK Temperature: 20 C Light intensity: 24-35 µmol photons/m²/sec, L/D cycle: 10L:14D Duration: 1 M
Gene information		18S rRNA ( AF123595 ) , psbA ( EU851958 )
Cell size (min - max)		- 2 μm
Organization
Characteristics		Planktonic ; Authentic strain (Ichinomiya et al. 2016) ; Non-siliceous flagellated stage[2018 May]
Other strain no.		Other collection strain no. : RCC205; CCMP1866 Other strain no. : OLI 31 SE3
Remarks		Fragile species to transportation stresses; Read and agree "How to order 4.1"
Movie

Related strain information (Large number of orders and same genus or species)
Strain number	Scientific name	Common name	Habitat (Isolation source)	Characteristics
NIES-3700	Triparma verrucosa		Marine (Seawater)	Genome decoded strain (Ban et al. 2023) ; Siliceous, Non-flagellated stage[2018 May]
NIES-2565	Triparma laevis		Marine (Seawater)	Genome decoded strain (Kuwata et al. 2020;（ Ban et al. 2023) ; Siliceous, Non-flagellated stage[2018 May]
NIES-3369	Triparma sp.		Marine (Seawater)	Non-siliceous flagellated stage[2018 May]
NIES-3370	Triparma eleuthera		Marine (Seawater)	Non-siliceous flagellated stage[2018 May]
NIES-3371	Triparma eleuthera		Marine (Seawater)	Planktonic ; Authentic strain (Ichinomiya et al. 2016) ; Non-siliceous flagellated stage[2018 May]

Related strain information (Whose relevance due to simultaneous purchases and other information is inferred by AI)
Strain number	Scientific name	Common name	Habitat (Isolation source)	Characteristics
NIES-3699	Triparma laevis		Marine (Seawater)	Genome decoded strain (Ban et al. 2023) ; Siliceous, Non-flagellated stage[2018 May]
NIES-3701	Triparma strigata		Marine (Seawater)	Genome decoded strain (Ban et al. 2023) ; Siliceous, Non-flagellated stage[2018 May]

Related strain information (Used in same reference)
Strain number	Scientific name	Common name	Habitat (Isolation source)	Characteristics
NIES-2691	Pelagomonas calceolata		Marine (Seawater)	Planktonic
NIES-2687	Mesopedinella arctica		Marine (Seawater)	Planktonic
NIES-2586	Picophagus flagellatus	Picoplankton	Marine (Seawater)	Authentic strain (Guillou et al. 1999) ; Heterotrophic ; Phagotrophic ; Planktonic
NIES-2588	Nannochloropsis granulata		Marine (Seawater)
NIES-2589	Symbiomonas scintillans		Marine (Seawater)	Heterotrophic ; Phagotrophic ; Planktonic

Reference
Ichinomiya, M., Yoshikawa, S., Kmiya, M., Ohki, K., Takaichi, S., Kuwata, A. 2011 Isolation and characterization of Parmales (Heterokonta/Heterokontophyta/Stramenopiles) from the Oyashio region, Western North Pacific. J. Phycol., 47, 144-151. Keywords: Bolidophyceae; diatoms; heterokonts; Parmales; PDMPO; phylogeny; stramenopiles; Triparma laevis Strain(s): 2565, 2682 PubMed: 27021720 DOI: 10.1111/j.1529-8817.2010.00926.x Guillou, L., Moon-van der Staay, S. Y., Claustre, H., Partensky, F., Vaulot, D. 1999 Diversity and abundance of Bolidophyceae (Heterokonta) in two oceanic regions. Appl. Environ. Microbiol., 65, 4528-4536. Strain(s): 2586, 2589, 2682, 2691 PubMed: 10508085 DOI: 10.1128/AEM.65.10.4528-4536.1999 Man-Aharonovich, D., Philosof, A., Kirkup, B. C., Le Gall, F., Yogev, T., Berman-Frank, I., Polz, M. F., Vaulot, D., Béjà, O. 2010 Diversity of active marine picoeukaryotes in the Eastern Mediterranean Sea unveiled using photosystem-II psbA transcripts. ISME J., 4, 1044-1052. Keywords: picoeukaryotes; PPEs; psbA; transcripts; Mediterranean Sea; diversity Strain(s): 2588, 2682, 2687 PubMed: 20237514 DOI: 10.1038/ismej.2010.25 Not, F., Simon, N., Biegala, I. C., Vaulot, D. 2002 Application of fluorescent in situ hybridization coupled with tyramide signal amplification (FISH-TSA) to assess eukaryotic picoplankton composition. Aquat. Microb. Ecol., 28, 157-166. Keywords: Fluorescent in situ hybridization; Tyramide signal amplification; Picoplankton; Eukaryotes; Coastal waters; Diversity Strain(s): 2673, 2682 DOI: 10.3354/ame028157 Guillou, L., Chrétiennot-Dinet, M. J., Medlin, L. K., Claustre, H., Loiseaux-de Goër, S., Vaulot, D. 1999 Bolidomonas: a new genus with two species belonging to a new algal class, the Bolidophyceae (Heterokonta). J. Phycol., 35, 368-381. Keywords: Bolidophyceae; diatoms; Heterokonta; marine picoeukaryotes; oligotrophic ocean; Stramenopiles Strain(s): 2682 DOI: 10.1046/j.1529-8817.1999.3520368.x Guillou, L. 2011 Characterization of the Parmales: much more than the resolution of a taxonomic enigma. J. Phycol., 47, 2-4. Strain(s): 2682, 3369, 3370, 3371 DOI: 10.1111/j.1529-8817.2010.00951.x Kessenich, C. R., Ruck, E. C., Schurko, A. M., Wickett, N. J., Alverson, A. J. 2014 Transcriptomic insights into the life history of Bolidophytes, the sister lineage to diatoms. J. Phycol., 50, 977-983. Keywords: Bolidomonas; diatoms; diplontic; haplodiplontic; life cycle; Parmales; transcriptome Strain(s): 2682 PubMed: 26988780 DOI: 10.1111/jpy.12222 Ichinomiya, M., Lopes dos Santos, A., Gourvil, P., Yoshikawa, S., Kamiya, M., Ohki, K., Audic, S., De Vargas, C., Noël, M. H., Vaulot, D., Kuwata, A. 2016 Diversity and oceanic distribution of the Parmales (Bolidophyceae), a picoplanktonic group closely related to diatoms. ISME J., 10, 2419-2434. Strain(s): 2565, 2682, 3369, 3370, 3371, 3699, 3700, 3701 PubMed: 27003244 DOI: 10.1038/ismej.2016.38 Kuwata, A., Yamada, K., Ichinomiya, M., Yoshikawa, S., Tragin, M., Vaulot, D., Lopes dos Santos, A. 2018 Bolidophyceae, a sister picoplanktonic group of diatoms – a review. Front. Mar. Sci., 5, 370 (article ID). Keywords: bolidophyceae; parmales; diatoms; genetic diversity; mitosis; geographical distribution; seasonal dynamics and silicification Strain(s): 2565, 2682, 3369, 3370, 3371, 3699, 3700, 3701 DOI: 10.3389/fmars.2018.00370

Reference

Ichinomiya, M., Yoshikawa, S., Kmiya, M., Ohki, K., Takaichi, S., Kuwata, A. 2011 Isolation and characterization of Parmales (Heterokonta/Heterokontophyta/Stramenopiles) from the Oyashio region, Western North Pacific. J. Phycol., 47, 144-151.
Keywords: Bolidophyceae; diatoms; heterokonts; Parmales; PDMPO; phylogeny; stramenopiles; Triparma laevis
Strain(s): 2565, 2682
PubMed: 27021720
DOI: 10.1111/j.1529-8817.2010.00926.x

Guillou, L., Moon-van der Staay, S. Y., Claustre, H., Partensky, F., Vaulot, D. 1999 Diversity and abundance of Bolidophyceae (Heterokonta) in two oceanic regions. Appl. Environ. Microbiol., 65, 4528-4536.
Strain(s): 2586, 2589, 2682, 2691
PubMed: 10508085
DOI: 10.1128/AEM.65.10.4528-4536.1999

Man-Aharonovich, D., Philosof, A., Kirkup, B. C., Le Gall, F., Yogev, T., Berman-Frank, I., Polz, M. F., Vaulot, D., Béjà, O. 2010 Diversity of active marine picoeukaryotes in the Eastern Mediterranean Sea unveiled using photosystem-II psbA transcripts. ISME J., 4, 1044-1052.
Keywords: picoeukaryotes; PPEs; psbA; transcripts; Mediterranean Sea; diversity
Strain(s): 2588, 2682, 2687
PubMed: 20237514
DOI: 10.1038/ismej.2010.25

Not, F., Simon, N., Biegala, I. C., Vaulot, D. 2002 Application of fluorescent in situ hybridization coupled with tyramide signal amplification (FISH-TSA) to assess eukaryotic picoplankton composition. Aquat. Microb. Ecol., 28, 157-166.
Keywords: Fluorescent in situ hybridization; Tyramide signal amplification; Picoplankton; Eukaryotes; Coastal waters; Diversity
Strain(s): 2673, 2682
DOI: 10.3354/ame028157

Guillou, L., Chrétiennot-Dinet, M. J., Medlin, L. K., Claustre, H., Loiseaux-de Goër, S., Vaulot, D. 1999 Bolidomonas: a new genus with two species belonging to a new algal class, the Bolidophyceae (Heterokonta). J. Phycol., 35, 368-381.
Keywords: Bolidophyceae; diatoms; Heterokonta; marine picoeukaryotes; oligotrophic ocean; Stramenopiles
Strain(s): 2682
DOI: 10.1046/j.1529-8817.1999.3520368.x

Guillou, L. 2011 Characterization of the Parmales: much more than the resolution of a taxonomic enigma. J. Phycol., 47, 2-4.
Strain(s): 2682, 3369, 3370, 3371
DOI: 10.1111/j.1529-8817.2010.00951.x

Kessenich, C. R., Ruck, E. C., Schurko, A. M., Wickett, N. J., Alverson, A. J. 2014 Transcriptomic insights into the life history of Bolidophytes, the sister lineage to diatoms. J. Phycol., 50, 977-983.
Keywords: Bolidomonas; diatoms; diplontic; haplodiplontic; life cycle; Parmales; transcriptome
Strain(s): 2682
PubMed: 26988780
DOI: 10.1111/jpy.12222

Ichinomiya, M., Lopes dos Santos, A., Gourvil, P., Yoshikawa, S., Kamiya, M., Ohki, K., Audic, S., De Vargas, C., Noël, M. H., Vaulot, D., Kuwata, A. 2016 Diversity and oceanic distribution of the Parmales (Bolidophyceae), a picoplanktonic group closely related to diatoms. ISME J., 10, 2419-2434.
Strain(s): 2565, 2682, 3369, 3370, 3371, 3699, 3700, 3701
PubMed: 27003244
DOI: 10.1038/ismej.2016.38

Kuwata, A., Yamada, K., Ichinomiya, M., Yoshikawa, S., Tragin, M., Vaulot, D., Lopes dos Santos, A. 2018 Bolidophyceae, a sister picoplanktonic group of diatoms – a review. Front. Mar. Sci., 5, 370 (article ID).
Keywords: bolidophyceae; parmales; diatoms; genetic diversity; mitosis; geographical distribution; seasonal dynamics and silicification
Strain(s): 2565, 2682, 3369, 3370, 3371, 3699, 3700, 3701
DOI: 10.3389/fmars.2018.00370

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