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Strain Data
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| Strain number | NIES-16 | |||
|---|---|---|---|---|
| Phylum | Heterokontophyta | |||
| Class | Bacillariophyceae | |||
| Scientific name | Skeletonema marinoi-dohrnii complex | |||
| Synonym | ||||
| Former name | Skeletonema costatum (Greville) Cleve | |||
| Common name | Centric diatom | |||
| Locality (Date of collection) | Harima-Nada, Seto Inland Sea Japan (1982-02-**) | |||
| Latitude / Longitude | ||||
| Habitat (Isolation source) | Marine (Sediment) | |||
| History | < Watanabe, Makoto M. | |||
| Isolator (Date of isolation) | Watanabe, Makoto M. (1982-05-**) | |||
| Identified by | Watanabe, Makoto M. | |||
| State of strain | Subculture; Unialgal; Clonal; Non-axenic | |||
|
Culture condition (Preculture condition) |
Medium:
f/2
Temperature: 15 C Light intensity: 8 µmol photons/m2/sec, L/D cycle: 10L:14D Duration: 1 M |
|||
| Gene information | 18S rRNA ( AB488607 ) , 28S rRNA ( DQ396508 ) , CO1 ( AB706228 ) | |||
| Cell size (min - max) | 2 - 5 μm | |||
| Organization | Unicellular | |||
| Characteristics | Red tide ; Planktonic ; DNA sequencing indicates this strain is included in Skeletonema marinoi/dohrnii clade | |||
| Other strain no. | Other strain no. : H-53-3 | |||
| Remarks | ||||
| Movie | ||||
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Related strain information
(Large number of orders and same genus or species)
|
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|---|---|---|---|---|
| Strain number | Scientific name | Common name | Habitat (Isolation source) | Characteristics |
|
NIES-2842 |
Skeletonema menzelii | Centric diatom | Marine (Seawater) | Planktonic |
|
NIES-2537 |
Skeletonema tropicum | Centric diatom | Marine (Seawater) | Red tide ; Planktonic |
NIES-323
|
Skeletonema marinoi-dohrnii complex | Centric diatom | Marine (Seawater) | Red tide ; Planktonic ; DNA sequencing indicates this strain is included in Skeletonema marinoi/dohrnii clade |
NIES-324
|
Skeletonema marinoi-dohrnii complex | Centric diatom | Marine (Seawater) | Red tide ; Test strain (Khanam et al. 2017) ; Planktonic ; DNA sequencing indicates this strain is included in Skeletonema marinoi/dohrnii clade |
|
NIES-2838 |
Skeletonema costatum | Centric diatom | Marine (Seawater) | Red tide (Yamada et al. 2010) ; Planktonic |
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Related strain information
(Whose relevance due to simultaneous purchases and other information is inferred by AI)
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|---|---|---|---|---|
| Strain number | Scientific name | Common name | Habitat (Isolation source) | Characteristics |
|
NIES-3698 |
Skeletonema sp. | Centric diatom | Marine (Seawater) | Red tide ; Planktonic |
NIES-223
|
Skeletonema marinoi-dohrnii complex | Centric diatom | Marine | Red tide ; Planktonic ; DNA sequencing indicates this strain is included in Skeletonema marinoi/dohrnii clade |
|
Related strain information
(Used in same reference)
|
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|---|---|---|---|---|
| Strain number | Scientific name | Common name | Habitat (Isolation source) | Characteristics |
|
NIES-534 |
Thalassionema nitzschioides | Pennate diatom | Marine (Seawater) | |
|
NIES-208 |
Oscillatoria rosea | Blue-green alga ; Cyanobacteria | Marine (Seawater) | Genome decoded strain (Zhu et al. 2017) |
|
NIES-17 |
Skeletonema marinoi-dohrnii complex | Centric diatom | Marine (Sediment) | Red tide ; Planktonic ; DNA sequencing indicates this strain is included in Skeletonema marinoi/dohrnii clade |
|
NIES-157 |
Heterochlamydomonas monticola | Green alga | Terrestrial (Soil) | Authentic strain (Watanabe 2020) ; Type specimen (NIES-50022, Epitype) |
NIES-225
|
Tabellaria flocculosa | Pennate diatom | Freshwater (Bog water) | |
| Reference |
|---|
|
Kobayashi, H., Ohta, S., Murao, N., Tachibana, H., Yamagata, S.
2000
Radiative transfer model for satellite remote sensing of ocean colors in coastal zones.
J. Global Environ. Eng.,
6,
13-31.
Keywords: equation of radiative transfer; coastal pollution; discharge of soil particle; red tide Strain(s): 16 DOI: 10.1117/12.411675 Otsuki, A., Watanabe, M. M., Sugahara, K. 1987 Chlorophyll pigments in methanol extracts from ten axenic cultured diatoms and three green algae as determined by reverse phase HPLC with fluorometric detection. J. Phycol., 23, 406-414. Keywords: chlorophyll c complex; chlorophyll pigments; diatoms; field desorption mass spectrometry; methanol extracts; reverse phase HPLC Strain(s): 16, 56, 71, 157, 225, 534 DOI: 10.1111/j.1529-8817.1987.tb02526.x Sekiguchi, M., Ohtsuki, A., Shibata, Y., Morita, M. 1995 Arsenic compounds accumulated in phytoplanktons of marine origin. J. Environ. Chem. [Kankyô-Kagaku], 5, 366-367 (in Japanese with English title). Strain(s): 16, 208, 440 Takeda, F., Sakamaki, T., Xu, K., Chiba, N., Nishimura, O., Sudo, R. 2003 Effect of potential allelochemicals extracted from Sargassum horneri on the growth of red tide microalgae. J. Environ. Syst. and Eng., JSCE, VII-29, 25-32. Keywords: Sargassum horneri; red tide microalgae; growth inhibition; allelochemicals Strain(s): 1, 16, 293 DOI: 10.2208/jscej.2003.748_25 Kooistra, W. H. C. F., Sarno, D., Balzano, S., Gu, H., Andersen, R. A., Zingone, A. 2008 Global diversity and biogeography of Skeletonema species (Bacillariophyta). Protist, 159, 177-193. Keywords: biogeography; cryptic species; distribution; LSU rDNA; phytoplankton; Skeletonema costatum Strain(s): 16, 17, 223, 323, 324 PubMed: 18042429 DOI: 10.1016/j.protis.2007.09.004 Tsuruta, K., Yoshida, Y., Kusumoto, N., Sekine, N., Ashitani, T., Takahashi, K. 2011 Inhibition activity of essential oils obtained from Japanese trees against Skeletonema costatum. J. Wood Sci., 57, 520-525. Keywords: Essential oil; Inhibition activity; Red tide plankton; · Skeletonema costatum; Woody waste Strain(s): 16 DOI: 10.1007/s10086-011-1209-7 Hasegawa, H., Maki, T., Asano, K., Ueda, K., Ueda, K. 2004 Detection of iron(III)-binding ligands originating from marine phytoplankton using cathodic stripping voltammetry. Anal. Sci., 20, 89-93. Strain(s): 1, 16 PubMed: 14753263 DOI: 10.2116/analsci.20.89 Yamada, M., Otsubo, M., Tsutsumi, Y., Mizota, C., Nakamura, Y., Takahashi, K., Iwataki M. 2017 Utility of mitochondrial-encoded cytochrome c oxidase I gene for phylogenetic analysis and species identification of the planktonic diatom genus Skeletonema. Phycol. Res., 65, 217-225. Keywords: cox1; genetic marker; LSU rDNA; phylogenetictree; species delimitation; SSU rDNA Strain(s): 16, 223, 2837, 2838, 2842 DOI: 10.1111/pre.12179 Hasegawa, H., Nozawa, A., Papry, R. I., Maki, T., Miki, O., Rahman, M. A. 2018 Effect of biodegradable chelating ligands on Fe uptake in and growth of marine microalgae. J. Appl. Phycol., 30 2215-2225. Keywords: Microalgae; Growth; Fe uptake; APCs; Chelating ligands Strain(s): 16 DOI: 10.1007/s10811-018-1462-x Suzuki, Y. & Hirayama, S. 2019 Development of rapid and simple bioassay using seaweed Pyropia yezoensis.. J. JIME, 54, 898-904 (in Japanese with English summary). Strain(s): 16 DOI: 10.5988/jime.54.898 |
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