Strain Data

Strain number		NIES-17
Phylum		Heterokontophyta
Class		Bacillariophyceae
Scientific name		Skeletonema marinoi-dohrnii complex
Synonym
Former name		Skeletonema costatum (Greville) Cleve
Common name		Centric diatom
Locality (Date of collection)		Harima-Nada, Seto Inland Sea Japan (1983-02-**)
Latitude / Longitude
Habitat (Isolation source)		Marine (Sediment)
History		< Watanabe, Makoto M.
Isolator (Date of isolation)		Watanabe, Makoto M. (1983-05-**)
Identified by		Watanabe, Makoto M.
State of strain		Subculture; Unialgal; Clonal; Non-axenic
Culture condition (Preculture condition)		Medium: f/2 Temperature: 15 C Light intensity: 8 µmol photons/m²/sec, L/D cycle: 10L:14D Duration: 1 M
Gene information		18S rRNA ( AB488608 )
Cell size (min - max)		- 7 μm
Organization		Unicellular
Characteristics		Red tide ; Planktonic ; DNA sequencing indicates this strain is included in Skeletonema marinoi/dohrnii clade
Other strain no.		Other strain no. : H-90-2
Remarks
Movie

Related strain information (Large number of orders and same genus or species)
Strain number	Scientific name	Common name	Habitat (Isolation source)	Characteristics
NIES-16	Skeletonema marinoi-dohrnii complex	Centric diatom	Marine (Sediment)	Red tide ; Planktonic ; DNA sequencing indicates this strain is included in Skeletonema marinoi/dohrnii clade
NIES-2537	Skeletonema tropicum	Centric diatom	Marine (Seawater)	Red tide ; Planktonic
NIES-323	Skeletonema marinoi-dohrnii complex	Centric diatom	Marine (Seawater)	Red tide ; Planktonic ; DNA sequencing indicates this strain is included in Skeletonema marinoi/dohrnii clade
NIES-324	Skeletonema marinoi-dohrnii complex	Centric diatom	Marine (Seawater)	Red tide ; Test strain (Khanam et al. 2017) ; Planktonic ; DNA sequencing indicates this strain is included in Skeletonema marinoi/dohrnii clade
NIES-2838	Skeletonema costatum	Centric diatom	Marine (Seawater)	Red tide (Yamada et al. 2010) ; Planktonic

Related strain information (Whose relevance due to simultaneous purchases and other information is inferred by AI)
Strain number	Scientific name	Common name	Habitat (Isolation source)	Characteristics
NIES-3698	Skeletonema sp.	Centric diatom	Marine (Seawater)	Red tide ; Planktonic
NIES-223	Skeletonema marinoi-dohrnii complex	Centric diatom	Marine	Red tide ; Planktonic ; DNA sequencing indicates this strain is included in Skeletonema marinoi/dohrnii clade
NIES-2535	Skeletonema japonicum	Centric diatom	Marine (Seawater)	Red tide ; Planktonic

Related strain information (Used in same reference)
Strain number	Scientific name	Common name	Habitat (Isolation source)	Characteristics
NIES-1976	Chattonella marina		Marine (Seawater)	Red tide
NIES-1379	Olisthodiscus luteus		Marine (Seawater)
NIES-372	Achnanthidium minutissimum	Pennate diatom	Freshwater (Plant)
NIES-2859	Ophiocytium sp.		Freshwater (Pond water)	Benthic
NIES-275	Cryptomonas ovata		Freshwater (Pond water)

Reference
Munekage, Y., Iwasaki, N., Le, T. X., Hasegawa, H., Natukawa, Y., Kikuhara, S. 2002 Studies on the distribution of antibiotics in water, suspended solid, bottom mud in semi-enclosed sea and its accumulation in plankton. Proceedings of the 12th International Offshore and Polar Engineering Conference, Kitakyushu, Japan 2002, pp. 425-431. Keywords: antibiotics; distribution; mud; sedimentation particles; accumulation; absorption; plankton Strain(s): 17, 613 Kooistra, W. H. C. F., Sarno, D., Balzano, S., Gu, H., Andersen, R. A., Zingone, A. 2008 Global diversity and biogeography of Skeletonema species (Bacillariophyta). Protist, 159, 177-193. Keywords: biogeography; cryptic species; distribution; LSU rDNA; phytoplankton; Skeletonema costatum Strain(s): 16, 17, 223, 323, 324 PubMed: 18042429 DOI: 10.1016/j.protis.2007.09.004 Kamikawa, R., Sanchez-Perez, G. F., Sako, Y., Roger, A. J., Inagaki, Y. 2009 Expanded phylogenies of canonical and non-canonical types of methionine adenosyltransferase reveal a complex history of these gene families in eukaryotes. Mol. Phylogenet. Evol., 53, 565-570. Keywords: Methionine adenosyltransferase; Lateral gene transfer; Diaoms; Aureococcus; Haptophytes; Cryptomonads Strain(s): 17, 350, 417, 534, 586, 1045, 1349 PubMed: 19577655 DOI: 10.1016/j.ympev.2009.06.016 Mitani, E., Nakayama, F., Matsuwaki, I., Ichi, I., Kawabata, A., Kawachi, M., Kato, M. 2017 Fatty acid composition profiles of 235 strains of three microalgal divisions within the NIES Microbial Culture Collection. Microb. Resour. Syst., 33, 19-29. Keywords: Cryptophyta; docosahexaenoic acid; eicosapentaenoic acid; fatty acid; Haptophyta; Heterokontophyta; microalgae Strain(s): 1, 8, 9, 14, 15, 17, 71, 115, 223, 225, 233, 234, 265, 274, 275, 276, 277, 278, 279, 280, 281, 282, 284, 293, 323, 324, 330, 333, 345, 347, 348, 350, 353, 372, 377, 388, 391, 395, 407, 408, 409, 413, 414, 417, 461, 462, 466, 487, 534, 548, 553, 556, 557, 558, 559, 560, 562, 587, 588, 589, 590, 603, 605, 622, 623, 695, 696, 697, 698, 699, 700, 701, 702, 703, 704, 705, 706, 707, 708, 710, 711, 712, 713, 714, 715, 716, 741, 765, 766, 805, 837, 997, 1001, 1002, 1003, 1004, 1005, 1006, 1007, 1009, 1011, 1016, 1017, 1044, 1045, 1046, 1047, 1302, 1303, 1324, 1330, 1339, 1340, 1349, 1353, 1370, 1375, 1376, 1379, 1383, 1384, 1385, 1386, 1387, 1391, 1392, 1393, 1395, 1398, 1399, 1400, 1401, 1699, 1700, 1730, 1813, 1815, 1816, 1826, 1827, 1831, 1862, 1863, 1864, 1865, 1874, 1963, 1964, 1965, 1974, 1975, 1976, 2142, 2143, 2144, 2145, 2147, 2148, 2300, 2331, 2332, 2351, 2363, 2364, 2365, 2369, 2370, 2376, 2506, 2533, 2534, 2535, 2536, 2537, 2590, 2633, 2668, 2689, 2690, 2691, 2693, 2694, 2696, 2697, 2707, 2716, 2717, 2718, 2720, 2722, 2723, 2725, 2726, 2729, 2730, 2731, 2732, 2770, 2771, 2772, 2773, 2839, 2840, 2841, 2842, 2843, 2844, 2859, 2872, 2878, 2890, 2899, 3391, 3689, 3690, 3691 DOI: 10.60369/microresys.33.1_19

Reference

Munekage, Y., Iwasaki, N., Le, T. X., Hasegawa, H., Natukawa, Y., Kikuhara, S. 2002 Studies on the distribution of antibiotics in water, suspended solid, bottom mud in semi-enclosed sea and its accumulation in plankton. Proceedings of the 12th International Offshore and Polar Engineering Conference, Kitakyushu, Japan 2002, pp. 425-431.
Keywords: antibiotics; distribution; mud; sedimentation particles; accumulation; absorption; plankton
Strain(s): 17, 613

Kooistra, W. H. C. F., Sarno, D., Balzano, S., Gu, H., Andersen, R. A., Zingone, A. 2008 Global diversity and biogeography of Skeletonema species (Bacillariophyta). Protist, 159, 177-193.
Keywords: biogeography; cryptic species; distribution; LSU rDNA; phytoplankton; Skeletonema costatum
Strain(s): 16, 17, 223, 323, 324
PubMed: 18042429
DOI: 10.1016/j.protis.2007.09.004

Kamikawa, R., Sanchez-Perez, G. F., Sako, Y., Roger, A. J., Inagaki, Y. 2009 Expanded phylogenies of canonical and non-canonical types of methionine adenosyltransferase reveal a complex history of these gene families in eukaryotes. Mol. Phylogenet. Evol., 53, 565-570.
Keywords: Methionine adenosyltransferase; Lateral gene transfer; Diaoms; Aureococcus; Haptophytes; Cryptomonads
Strain(s): 17, 350, 417, 534, 586, 1045, 1349
PubMed: 19577655
DOI: 10.1016/j.ympev.2009.06.016

Mitani, E., Nakayama, F., Matsuwaki, I., Ichi, I., Kawabata, A., Kawachi, M., Kato, M. 2017 Fatty acid composition profiles of 235 strains of three microalgal divisions within the NIES Microbial Culture Collection. Microb. Resour. Syst., 33, 19-29.
Keywords: Cryptophyta; docosahexaenoic acid; eicosapentaenoic acid; fatty acid; Haptophyta; Heterokontophyta; microalgae
Strain(s): 1, 8, 9, 14, 15, 17, 71, 115, 223, 225, 233, 234, 265, 274, 275, 276, 277, 278, 279, 280, 281, 282, 284, 293, 323, 324, 330, 333, 345, 347, 348, 350, 353, 372, 377, 388, 391, 395, 407, 408, 409, 413, 414, 417, 461, 462, 466, 487, 534, 548, 553, 556, 557, 558, 559, 560, 562, 587, 588, 589, 590, 603, 605, 622, 623, 695, 696, 697, 698, 699, 700, 701, 702, 703, 704, 705, 706, 707, 708, 710, 711, 712, 713, 714, 715, 716, 741, 765, 766, 805, 837, 997, 1001, 1002, 1003, 1004, 1005, 1006, 1007, 1009, 1011, 1016, 1017, 1044, 1045, 1046, 1047, 1302, 1303, 1324, 1330, 1339, 1340, 1349, 1353, 1370, 1375, 1376, 1379, 1383, 1384, 1385, 1386, 1387, 1391, 1392, 1393, 1395, 1398, 1399, 1400, 1401, 1699, 1700, 1730, 1813, 1815, 1816, 1826, 1827, 1831, 1862, 1863, 1864, 1865, 1874, 1963, 1964, 1965, 1974, 1975, 1976, 2142, 2143, 2144, 2145, 2147, 2148, 2300, 2331, 2332, 2351, 2363, 2364, 2365, 2369, 2370, 2376, 2506, 2533, 2534, 2535, 2536, 2537, 2590, 2633, 2668, 2689, 2690, 2691, 2693, 2694, 2696, 2697, 2707, 2716, 2717, 2718, 2720, 2722, 2723, 2725, 2726, 2729, 2730, 2731, 2732, 2770, 2771, 2772, 2773, 2839, 2840, 2841, 2842, 2843, 2844, 2859, 2872, 2878, 2890, 2899, 3391, 3689, 3690, 3691
DOI: 10.60369/microresys.33.1_19

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