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Strain Data
| Strain number | NIES-3576 | |||
|---|---|---|---|---|
| Phylum | Heterokontophyta | |||
| Class | Bacillariophyceae | |||
| Scientific name | Nitzschia sp. | |||
| Synonym | ||||
| Former name | ||||
| Common name | Pennate diatom | |||
| Locality (Date of collection) | Miyara River, Ishigaki, Okinawa, Japan (2012-03-06) | |||
| Latitude / Longitude | ||||
| Habitat (Isolation source) | Brackish water (Plant (Mangrove)) | |||
| History | < Nakayama, Takeshi < Kamikawa, Ryoma < Taira, Misaka | |||
| Isolator (Date of isolation) | Taira, Misaka (2012-03-**) | |||
| Identified by | Mayama, Shigeki | |||
| State of strain | Cryopreservation; Unialgal; Clonal; Axenic | |||
|
Culture condition (Preculture condition) |
Medium:
ESM + CB-V
Temperature: 20 C Light intensity: 0 µmol photons/m2/sec, Duration: 21 D |
|||
| Gene information | Mitochondrial genome ( AP018509 ) , Plastid genome ( AP018508 ) , 16S rRNA ( AB899716 ) , 28S rRNA ( AB899702 ) | |||
| Cell size (min - max) | - 20 μm | |||
| Organization | Unicellular | |||
| Characteristics | Heterotrophic ; Benthic ; Nonphotosynthetic plastids ; Genome decoded strain (Kamikawa et al. 2018) | |||
| Other strain no. | Other strain no. : A4 | |||
| Remarks | Cryopreserved; Axenic; Nonphotosynthetic plastids | |||
| Movie | ||||
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Related strain information
(Large number of orders and same genus or species)
|
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|---|---|---|---|---|
| Strain number | Scientific name | Common name | Habitat (Isolation source) | Characteristics |
|
NIES-3577 |
Nitzschia sp. | Pennate diatom | Brackish water (Plant (Mangrove)) | Heterotrophic ; Benthic ; Nonphotosynthetic plastids |
|
NIES-3580 |
Nitzschia sp. | Pennate diatom | Brackish water (Plant (Mangrove)) | Heterotrophic ; Benthic ; Nonphotosynthetic plastids |
NIES-1339
|
Nitzschia sp. | Pennate diatom | Marine (Seawater) | |
|
NIES-1340 |
Nitzschia sp. | Pennate diatom | Marine (Seawater) | |
|
NIES-3581 |
Nitzschia sp. | Pennate diatom | Brackish water (Plant (Mangrove)) | Heterotrophic ; Benthic ; Nonphotosynthetic plastids ; Genome decoded strain (Kamikawa et al. 2018) |
|
Related strain information
(Whose relevance due to simultaneous purchases and other information is inferred by AI)
|
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|---|---|---|---|---|
| Strain number | Scientific name | Common name | Habitat (Isolation source) | Characteristics |
|
NIES-4020 |
Nitzschia brevissima | Pennate diatom | Terrestrial (Concrete revetment) | Epilithic ; Active gliding motility |
NIES-487
|
Nitzschia palea | Pennate diatom | Freshwater (River water) | Test strain (Nagai, T., 2016) |
|
NIES-4239 |
Nitzschia putrida | Pennate diatom | Brackish water (Fallen leaves) | Heterotrophic ; Attached ; Nonphotosynthetic plastids ; Genome decoded strain (Kamikawa et al. 2022) |
|
Related strain information
(Used in same reference)
|
||||
|---|---|---|---|---|
| Strain number | Scientific name | Common name | Habitat (Isolation source) | Characteristics |
|
NIES-3578 |
Nitzschia sp. | Pennate diatom | Brackish water (Plant (Mangrove)) | Heterotrophic ; Benthic ; Nonphotosynthetic plastids |
|
NIES-3745 |
Euglena anabaena | Freshwater (Pond water) | ||
|
NIES-699 |
Rhodomonas atrorosea | Marine | Authentic strain | |
|
NIES-2860 |
Vacuoliviride crystalliferum | Freshwater (Paste) | Benthic ; Authentic strain (Nakayama et al. 2015) | |
NIES-4391
|
Chromera velia | Marine (Coral (Plesiastrea versipora)) | Authentic strain (Moore et al. 2008) | |
| Reference |
|---|
|
Kamikawa, R., Yubuki, N., Yoshida, M., Taira, M., Nakamura, N., Ishida, K-I., Leander, B. S., Miyashita, H., Hashimoto, T., Mayama, S., Inagaki, Y.
2015
Multiple losses of photosynthesis in Nitzschia (Bacillariophyceae).
Phycol. Res.,
63,
19-28.
Keywords: apochlorotic diatoms; genetic diversity; large subunit rRNA; molecular phylogenetic analysis; nonphotosynthetic plastids; plastid 16S rRNA Strain(s): 3576, 3577, 3578, 3579, 3580, 3581 DOI: 10.1111/pre.12072 Kamikawa, R., Azuma, T., Ishii, K-I., Matsuno, Y., Miyashita, H. 2018 Diversity of organellar genomes in non-photosynthetic diatoms. Protist, 169, 351-361. Keywords: ATP synthase complex; mitochondria; Nitzschia; plastids; vitamin B1 Strain(s): 2729, 3576, 3581 PubMed: 29803116 DOI: 10.1016/j.protis.2018.04.009 Hamana, K., Furuchi, T., Hayashi, H., Niitsu, M. 2022 Additional polyamine analysis of algal chlorarachniophytes, euglenophytes, haptophytes, cryptophytes, dinoflagellates, chromerids and heterokontophytes. —Polyamine analysis of algae IV— Microb. Resour. Syst., 38, 51-62. Keywords: alga; chlorarachniophyte; chromerid; dinoflagellate; polyamine Strain(s): 12, 47, 48, 253, 274, 276, 277, 282, 286, 304, 331, 381, 387, 463, 623, 624, 699, 706, 715, 741, 1443, 2145, 2146, 2149, 2351, 2433, 2535, 2584, 2588, 2635, 2677, 2716, 2728, 2860, 3576, 3745, 4060, 4109, 4280, 4391, 4392 DOI: 10.60369/microresys.38.2_51 |
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