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Strain Data
| Strain number | NIES-3581 | |||
|---|---|---|---|---|
| Phylum | Heterokontophyta | |||
| Class | Bacillariophyceae | |||
| Scientific name | Nitzschia sp. | |||
| Synonym | ||||
| Former name | ||||
| Common name | Pennate diatom | |||
| Locality (Date of collection) | Funaura, Taketomi, Okinawa, Japan (2012-02-04) | |||
| Latitude / Longitude | ||||
| Habitat (Isolation source) | Brackish water (Plant (Mangrove)) | |||
| History | < Nakayama, Takeshi < Kamikawa, Ryoma | |||
| Isolator (Date of isolation) | Kamikawa, Ryoma (2012-02-11) | |||
| Identified by | Mayama, Shigeki | |||
| State of strain | Cryopreservation; Unialgal; Clonal; Axenic | |||
|
Culture condition (Preculture condition) |
Medium:
ESM + CB-V
Temperature: 20 C Light intensity: 0 µmol photons/m2/sec, Duration: 14 D |
|||
| Gene information | Mitochondrial genome ( AP018510 ) , 28S rRNA ( AB899689 ) , 16S rRNA ( AB899709 ) | |||
| Cell size (min - max) | 10 - μm | |||
| Organization | Unicellular | |||
| Characteristics | Heterotrophic ; Benthic ; Nonphotosynthetic plastids ; Genome decoded strain (Kamikawa et al. 2018) | |||
| Other strain no. | Other strain no. : IriIs04 | |||
| Remarks | Cryopreserved; Axenic; Nonphotosynthetic plastids | |||
| Movie | ||||
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Related strain information
(Large number of orders and same genus or species)
|
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|---|---|---|---|---|
| Strain number | Scientific name | Common name | Habitat (Isolation source) | Characteristics |
|
NIES-3576 |
Nitzschia sp. | Pennate diatom | Brackish water (Plant (Mangrove)) | Heterotrophic ; Benthic ; Nonphotosynthetic plastids ; Genome decoded strain (Kamikawa et al. 2018) |
|
NIES-3577 |
Nitzschia sp. | Pennate diatom | Brackish water (Plant (Mangrove)) | Heterotrophic ; Benthic ; Nonphotosynthetic plastids |
|
NIES-3580 |
Nitzschia sp. | Pennate diatom | Brackish water (Plant (Mangrove)) | Heterotrophic ; Benthic ; Nonphotosynthetic plastids |
NIES-1339
|
Nitzschia sp. | Pennate diatom | Marine (Seawater) | |
|
NIES-1340 |
Nitzschia sp. | Pennate diatom | Marine (Seawater) | |
|
Related strain information
(Whose relevance due to simultaneous purchases and other information is inferred by AI)
|
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|---|---|---|---|---|
| Strain number | Scientific name | Common name | Habitat (Isolation source) | Characteristics |
|
NIES-4020 |
Nitzschia brevissima | Pennate diatom | Terrestrial (Concrete revetment) | Epilithic ; Active gliding motility |
NIES-487
|
Nitzschia palea | Pennate diatom | Freshwater (River water) | Test strain (Nagai, T., 2016) |
|
NIES-4239 |
Nitzschia putrida | Pennate diatom | Brackish water (Fallen leaves) | Heterotrophic ; Attached ; Nonphotosynthetic plastids ; Genome decoded strain (Kamikawa et al. 2022) |
|
Related strain information
(Used in same reference)
|
||||
|---|---|---|---|---|
| Strain number | Scientific name | Common name | Habitat (Isolation source) | Characteristics |
|
NIES-3578 |
Nitzschia sp. | Pennate diatom | Brackish water (Plant (Mangrove)) | Heterotrophic ; Benthic ; Nonphotosynthetic plastids |
|
NIES-2729 |
Nitzschia palea | Pennate diatom | Freshwater (Stone) | Test strain for AGP etc. (Ishihara, S. et al. 2006) ; Genome decoded strain (Kamikawa et al. 2018) |
|
NIES-3579 |
Nitzschia sp. | Pennate diatom | Brackish water (Plant (Mangrove)) | Heterotrophic ; Benthic ; Nonphotosynthetic plastids |
| Reference |
|---|
|
Kamikawa, R., Yubuki, N., Yoshida, M., Taira, M., Nakamura, N., Ishida, K-I., Leander, B. S., Miyashita, H., Hashimoto, T., Mayama, S., Inagaki, Y.
2015
Multiple losses of photosynthesis in Nitzschia (Bacillariophyceae).
Phycol. Res.,
63,
19-28.
Keywords: apochlorotic diatoms; genetic diversity; large subunit rRNA; molecular phylogenetic analysis; nonphotosynthetic plastids; plastid 16S rRNA Strain(s): 3576, 3577, 3578, 3579, 3580, 3581 DOI: 10.1111/pre.12072 Kamikawa, R., Tanifuji, Ishikawa, G. S., Ishii, K., Matsuno, Y., Onodera, N. T., Ishida, K-I., Hashimoto, T., Miyashita, H., Mayama, S., Inagaki, Y. 2015 Proposal of a Twin-arginine translocator system-mediated constraint against loss of ATP synthase genes from nonphotosynthetic plastid genomes. Mol. Biol. Evol., 32, 2598-2604. Keywords: apochlorotic diatoms; nonphotosynthetic plastid genome; genome reduction; ATP synthase complex; Twin-arginine translocator Strain(s): 3581 PubMed: 26048548 DOI: 10.1093/molbev/msv134 Kamikawa, R., Azuma, T., Ishii, K-I., Matsuno, Y., Miyashita, H. 2018 Diversity of organellar genomes in non-photosynthetic diatoms. Protist, 169, 351-361. Keywords: ATP synthase complex; mitochondria; Nitzschia; plastids; vitamin B1 Strain(s): 2729, 3576, 3581 PubMed: 29803116 DOI: 10.1016/j.protis.2018.04.009 Onyshchenko, A., Ruck, E. C., Nakov, T., Alverson, A. J. 2019 A single loss of photosynthesis in the diatom order Bacillariales (Bacillariophyta). Am. J. Bot., 106, 560-572. Keywords: Nitzschia; apochloritic; chloroplast; photosynthesis; phylogeny; plastid Strain(s): 3581 PubMed: 30958893 DOI: 10.1002/ajb2.1267 Moog, D., Nozawa, A., Tozawa, Y., Kamikawa, R. 2020 Substrate specifcity of plastid phosphate transporters in a non-photosynthetic diatom and its implication in evolution of red algaderived complex plastids. Sci Rep, 10, 1167 (article ID). Strain(s): 3581 PubMed: 31980711 DOI: 10.1038/s41598-020-58082-8 Onyshchenko, A., Roberts, W. R., Ruck, E. C., Lewis, J. A., Alverson, A. J. 2021 The genome of a nonphotosynthetic diatom provides insights into the metabolic shift to heterotrophy and constraints on the loss of photosynthesis. New Phytol., 232, 1750-1764. Keywords: apochloritic; B-ketoadipate pathway; Entner-Doudoroff Pathway; glycolysis; lignin; mixotrophy; oxidative pentose phosphate pathway; photosynthesis Strain(s): 3581 PubMed: 34379807 DOI: 10.1111/nph.17673 |
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