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Strain Data
| Strain number | NIES-3708 | |||
|---|---|---|---|---|
| Phylum | Cyanophyta | |||
| Class | Cyanophyceae | |||
| Scientific name | Geminocystis sp. | |||
| Synonym | ||||
| Former name | ||||
| Common name | Blue-green alga ; Cyanobacteria | |||
| Locality (Date of collection) | Mimomi Hongo Park, Narashino, Chiba, Japan (2013-11-01) | |||
| Latitude / Longitude | 35.684195 / 140.064770 | |||
| Habitat (Isolation source) | Freshwater (Lake water) | |||
| History | < Hirose, Yuu < Katayama, Mitsunori | |||
| Isolator (Date of isolation) | Katayama, Mitsunori (2013-11-01) | |||
| Identified by | Hirose, Yuu | |||
| State of strain | Cryopreservation; Unialgal; Clonal; Axenic[2018 Mar] | |||
|
Culture condition (Preculture condition) |
Medium:
BG-11
Temperature: 20 C Light intensity: 6-10 µmol photons/m2/sec, L/D cycle: 10L:14D Duration: 2 M |
|||
| Gene information | Whole-genome ( AP014815 ) | |||
| Cell size (min - max) | ||||
| Organization | ||||
| Characteristics | Phototaxis ; chromatic adaptation ; Genome decoded strain (Hirose et al. 2015a) | |||
| Other strain no. | Other strain no. : CIT003 | |||
| Remarks | Cryopreserved; Axenic | |||
| Movie | ||||
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Related strain information
(Large number of orders and same genus or species)
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|---|---|---|---|---|
| Strain number | Scientific name | Common name | Habitat (Isolation source) | Characteristics |
|
NIES-3709 |
Geminocystis sp. | Blue-green alga ; Cyanobacteria | Freshwater (Lake water) | Phototaxis ; chromatic adaptation ; Genome decoded strain (Hirose et al. 2015a) |
|
Related strain information
(Used in same reference)
|
||||
|---|---|---|---|---|
| Strain number | Scientific name | Common name | Habitat (Isolation source) | Characteristics |
|
NIES-611 |
Pseudanabaena sp. | Blue-green alga ; Cyanobacteria | Freshwater (Lake water) | |
|
NIES-2665 |
Umezakia ovalisporum | Blue-green alga ; Cyanobacteria | Freshwater (Water) | Nitrogen fixation (aerobic condition, Modified BG-110 medium, N-Free medium) |
|
NIES-905 |
Planktothrix agardhii | Blue-green alga ; Cyanobacteria | Freshwater | Cyanobacterial water bloom (aoko) ; Toxicity ; Planktonic ; Genome decoded strain (Suzuki et al. 2019) |
NIES-1133
|
Microcystis aeruginosa | Blue-green alga ; Cyanobacteria | Freshwater (Lake water) | Cyanobacterial water bloom (aoko) ; Toxicity ; microcystin (+) (Tanabe et al. 2009b) ; Reisolated from TAC 157 ; ST76 (Tanabe, Y. et al. 2007) |
NIES-592
|
Mastigocladus sp. | Blue-green alga ; Cyanobacteria | Hot spring (Water) | Benthic ; Genome decoded strain (Zhu et al. 2017) |
| Reference |
|---|
|
Hirose, Y., Katayama, M., Ohtsubo, Y., Misawa, N., Iioka, E., Suda, W., Oshima, K., Hanaoka, M., Tanaka, K., Eki, T., Ikeuchi, M., Kikuchi, Y., Ishida, M., Hattori, M.
2015a
Complete genome sequence of cyanobacterium Geminocystis sp. strain NIES-3708, which performs type II complementary chromatic acclimation.
GenomeA,
3,
e00357-15 (article ID).
Strain(s): 3708 PubMed: 25953174 DOI: 10.1128/genomeA.00357-15 Hirose, Y., Misawa, N., Yonekawa, C., Nagao, N., Watanabe, M., Ikeuchi, M., Eki, T. 2017 Characterization of the genuine type 2 chromatic acclimation in the two Geminocystis cyanobacteria. DNA Res., 24, 387-396. Keywords: Cyanobacteria; chromatic acclimation; phycobilisome; cyanobacteriochrome Strain(s): 3708, 3709 PubMed: 28338901 DOI: 10.1093/dnares/dsx011 Asukabe, H., Akahori, S., Ueno, E., Nakayama, T., Yamashita, R., Arii, S., Harada, K., Imanishi, S. Y. 2020 Cyanobacterial classification with the toxicity using MALDI Biotyper. J. Am. Soc. Mass Spectrom., 31, 1572-1578. Keywords: cyanobacteria; MALDI Biotyper; microcystins; profiling Strain(s): 27, 39, 42, 73, 81, 87, 89, 100, 101, 102, 103, 104, 105, 107, 111, 112, 207, 208, 230, 266, 298, 416, 433, 478, 510, 512, 515, 592, 593, 604, 611, 808, 809, 835, 843, 846, 847, 905, 928, 931, 932, 945, 981, 989, 1025, 1043, 1058, 1061, 1064, 1068, 1069, 1071, 1076, 1085, 1099, 1101, 1105, 1113, 1115, 1126, 1133, 1134, 1135, 1144, 1157, 1215, 1642, 1643, 1652, 1668, 1672, 1673, 1677, 1678, 1698, 2087, 2131, 2412, 2665, 3708, 3733, 3734, 3736, 3755, 3756, 3757 PubMed: 32501712 DOI: 10.1021/jasms.0c00148 Ohbayashi, R., Hirooka, S., Onuma, R., Kanesaki, Y., Hirose, Y., Kobayashi, Y., Fujiwara, T., Furusawa, C., Miyagishima, S. 2020 Evolutionary changes in DnaA-dependent chromosomal replication in cyanobacteria. Front. Microbiol., 11, 786 (article ID). Keywords: CDS skew; chromosome replication; cyanobacteria; DnaA, GC skew; polyploidy Strain(s): 3708 PubMed: 32411117 DOI: 10.3389/fmicb.2020.00786 Karimi-Fard, A., Saidi, A., Tohidfar, M., Emami, S. N. 2025 Integrative bioinformatics approaches reveal key hub genes in cyanobacteria: insights from Synechocystis sp. PCC 6803 and Geminocystis sp. NIES-3708 under abiotic stress conditions. Genes Genom., 47, 383–397. Keywords: Environmental stresses; Meta-analysis; WGCNA; Machine learning; Gene expression; Cyanobacteria Strain(s): 3708 PubMed: 39849193 DOI: 10.1007/s13258-025-01615-0 |
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