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Strain Data
| Strain number | NIES-3715 | |||
|---|---|---|---|---|
| Phylum | Heterokontophyta | |||
| Class | Bacillariophyceae | |||
| Scientific name | Chaetoceros tenuissimus Meunier | |||
| Synonym | ||||
| Former name | ||||
| Common name | Centric diatom | |||
| Locality (Date of collection) | off Maikohama, Harima-nada, Seto Inland Sea, Hyogo Japan (2002-08-10) | |||
| Latitude / Longitude | 34.62888888 / 135.03525 | |||
| Habitat (Isolation source) | Marine (Seawater) | |||
| History | < Kimura, Kei < Tomaru, Yuji | |||
| Isolator (Date of isolation) | Tomaru, Yuji (2002-08-11) | |||
| Identified by | Suzuki, Hidekazu; Nagumo, Tamotsu | |||
| State of strain | Subculture / Cryopreservation; Unialgal; Clonal; Axenic | |||
|
Culture condition (Preculture condition) |
Medium:
mSWM-3
Temperature: 15 C Light intensity: 9-11 µmol photons/m2/sec, L/D cycle: 10L:14D Duration: 21 D |
|||
| Gene information | Whole-genome ( BLLK01000000 ) , Mitochondrial genome ( LC537470 ) , Plastid genome ( LC537471 ) , 18S rRNA ( AB847417 ) | |||
| Cell size (min - max) | ||||
| Organization | Unicellular | |||
| Characteristics | Red tide ; Genome decoded strain (Hongo et al. 2021) ; The virus which infects with this diatom strain has been reported (Shirai et al. 2008). | |||
| Other strain no. |
Other collection strain no. : CCAP 1010/43
Other strain no. : 2-10 |
|||
| Remarks | Axenic | |||
| Movie | ||||
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Related strain information
(Large number of orders and same genus or species)
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|---|---|---|---|---|
| Strain number | Scientific name | Common name | Habitat (Isolation source) | Characteristics |
NIES-586
|
Chaetoceros didymus | Centric diatom | Marine (Seawater) | Red tide ; Test strain (Kohira, M.., et al. 2016) |
NIES-377
|
Chaetoceros socialis | Centric diatom | Marine (Seawater) | |
|
NIES-3710 |
Chaetoceros debilis | Centric diatom | Marine (Seawater) | Red tide ; Resting spore-forming ; The virus which infects with this diatom strain has been reported (Tomaru, Y. et al. 2008). |
NIES-3711
|
Chaetoceros lorenzianus | Centric diatom | Marine (Seawater) | Red tide ; The virus which infects with this diatom strain has been reported (Tomaru et al. 2011). |
|
NIES-3713 |
Chaetoceros socialis | Centric diatom | Marine (Seawater) | Red tide ; The virus which infects with this diatom strain has been reported (Tomaru et al. 2009). |
|
Related strain information
(Whose relevance due to simultaneous purchases and other information is inferred by AI)
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|---|---|---|---|---|
| Strain number | Scientific name | Common name | Habitat (Isolation source) | Characteristics |
|
NIES-3714 |
Chaetoceros tenuissimus | Centric diatom | Marine (Seawater) | Red tide ; The virus which infects with this diatom strain has been reported (Tomaru et al. 2010). |
|
Related strain information
(Used in same reference)
|
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|---|---|---|---|---|
| Strain number | Scientific name | Common name | Habitat (Isolation source) | Characteristics |
|
NIES-3712 |
Chaetoceros setoensis | Centric diatom | Marine (Seawater) | Red tide ; The virus which infects with this diatom strain has been reported (Tomaru et al. 2013). |
NIES-324
|
Skeletonema marinoi-dohrnii complex | Centric diatom | Marine (Seawater) | Red tide ; Test strain (Khanam et al. 2017) ; Planktonic ; DNA sequencing indicates this strain is included in Skeletonema marinoi/dohrnii clade |
| Reference |
|---|
|
Tomaru, Y., Shirai, Y., Toyoda, K., Nagasaki, K.
2011
Isolation and characterisation of a single-stranded DNA virus infecting the marine planktonic diatom Chaetoceros tenuissimus.
Aquat. Microb. Ecol.,
64,
175-184.
Keywords: Bacilladnavirus; Chaetoceros; Diatom; ssDNA; Virus; Rod-shaped particle Strain(s): 3714, 3715 DOI: 10.3354/ame01517 Shirai, Y., Tomaru, Y., Takao, Y., Suzuki, H., Nagumo, T., Nagasaki, K. 2008 Isolation and characterization of a single-stranded DNA virus infecting the marine planktonic diatom Chaetoceros tenuissimus Meunier. Appl. Environ. Microbiol., 74, 4022-4027. Strain(s): 3715 PubMed: 18469125 DOI: 10.1128/AEM.00509-08 Tomaru, Y., Toyoda, K., Kimura, K. 2018 Occurrence of the planktonic bloom-forming marine diatom Chaetoceros tenuissimus Meunier and its infectious viruses in western Japan. Hydrobiologia, 805, 221-230. Keywords: Algal viruses; Primary producers; Marine algae; Real-time quantitative PCR; Restingstage cells Strain(s): 3714, 3715 DOI: 10.1007/s10750-017-3306-0 Yamada, Y., Tomaru, Y., Fukuda, H., Nagata, T. 2018 Aggregate formation during the viral lysis of a marine diatom. Front. Mar. Sci., 15, 167 (article ID). Keywords: aggregate; diatom–virus interaction; particle size distribution; settling velocity; material cycle Strain(s): 3715 DOI: 10.3389/fmars.2018.00167 Hano, T. & Tomaru, Y. 2019 Metabolomics-based approach to explore growth phase-dependent markers in cultured diatom Chaetoceros tenuissimus. J. Chromatogr. B, 1128, 121779 (article ID). Keywords: Diatom; Metabolomics; Gas chromatography mass spectrometry; Liquid chromatography tandem mass spectrometry; Growth phase Strain(s): 3715 PubMed: 31499295 DOI: 10.1016/j.jchromb.2019.121779 Toyoda, K., Nagasaki, K., Tomaru, Y. 2010 Application of real-time PCR assay for detection and quantification of bloom-forming diatom Chaetoceros tenuissimus Meunier. Plankton Benthos Res., 5, 56-61. Keywords: Chaetoceros tenuissimus; detection; diatom; enumeration; TaqMan-based real-time PCR Strain(s): 3715 DOI: 10.3800/pbr.5.56 Tomaru, Y. & Kimura, K. 2020 Novel protocol for estimating viruses specifically infecting the marine planktonic diatoms. Diversity-Basel, 12, 225 (article ID). Keywords: marine diatom; Chaetoceros tenuissimus; Chaetoceros setoensis; host-virus specificity; RdRp; ssRNA virus; ssDNA virus; viral genome Strain(s): 3712, 3714, 3715 DOI: 10.3390/d12060225 Tomaru, Y., Yamaguchi, H., Miki, T. 2021 Growth rate-dependent cell death of diatoms due to viral infection and their subsequent coexistence in a semi-continuous culture system. Microbes Environ., 36, ME20116 (article ID). Keywords: diatom; population dynamics; viral infection Strain(s): 3715 PubMed: 33390375 DOI: 10.1264/jsme2.ME20116 Grzebyk, D., Pasqualini, V., Garrido, M., Quilichini, Y., Pereto, C., Cecchi, P. 2022 Insight into the morphology and genetic diversity of the Chaetoceros tenuissimus (Bacillariophyta) species complex. Eur. J. Phycol., 57, 507-525. Keywords: Cell division; Chaetoceros tenuissimus; internal transcribed spacer (ITS); morphology; phylogeny; rDNA; ultrastructure Strain(s): 3715 DOI: 10.1080/09670262.2022.2029949 Hongo, Y., Kimura, K., Takaki, Y., Yoshida, Y., Baba, S., Kobayashi, G., Nagasaki, K., Hano, T., Tomaru, Y. 2021 The genome of the diatom Chaetoceros tenuissimus carries an ancient integrated fragment of an extant virus. Sci Rep, 11, 22877 (article ID). Strain(s): 3715 PubMed: 34819553 DOI: 10.1038/s41598-021-00565-3 Yamaguchi, H., Zaima, M., Adachi, M., Tomaru, Y., Asahara, H., Nishiwaki, N. 2022 Selective utilization of phosphorus compounds by Chaetoceros tenuissimus (Bacillariophyceae): Approach using 31P nuclear magnetic resonance analysis. Phycol. Res., 70, 151-159. Keywords: Chaetoceros tenuissimus; chelating resin; diatom; nuclear magnetic resonance (NMR); organic phosphorus,phosphatase; phosphate esters Strain(s): 3715 DOI: 10.1111/pre.12485 Nef, C., Madoui, M., Pelletier, É., Bowler, C. 2022 Whole-genome scanning reveals environmental selection mechanisms that shape diversity in populations of the epipelagic diatom Chaetoceros. PLoS. Biol., 20, e3001893 (article ID). Strain(s): 3715 PubMed: 36441816 DOI: 10.1371/journal.pbio.3001893 Hano, T. & Tomaru, Y. 2023 Chronological age-related metabolome responses in the dinoflagellate Karenia mikimotoi, can predict future bloom demise. Commun. Biol., 6, 273 (article ID). Strain(s): 3715 PubMed: 36922623 DOI: 10.1038/s42003-023-04646-z Yamaguchi, H., Sumida, N., Matsukawa, K., Adachi, M., Tomaru, Y., Ishikawa, K., Hotta, J. 2023 Establishment of a simple method for cryopreservation of the marine diatoms, Chaetoceros and Phaeodactylum. J. Appl. Phycol., 33, 2285–2293. Keywords: CELLBANKER; Cryopreservation; Marine diatoms; Chaetoceros tenuissimus; Phaeodactylum tricornutum; Transgenic diatom Strain(s): 324, 3714, 3715 DOI: 10.1007/s10811-023-03040-w Hongo, Y., Hano, T., Yamaguchi, H., Tamaru, Y. 2023 Transcriptional responses of the marine diatom Chaetoceros tenuissimus to phosphate deficiency. Gene, 884, 147695 (article ID). Keywords: Phosphorus-deficiency; Differentially expressed genes; RNA-seq; Nonphospholipid; Alkaline phosphatase; Diatom Strain(s): 3715 PubMed: 37549856 DOI: 10.1016/j.gene.2023.147695 Tomaru, Y. 2025 Kinetics of adsorption of two distinct viruses to marine planktonic diatom Chaetoceros tenuissimus Meunier. Plankton Benthos Res., 20, 142-147. Keywords: adsorption kinetics; Chaetoceros tenuissimus; CtenDNAV-II; CtenRNAV-II; diatom Strain(s): 3713, 3714, 3715 DOI: 10.3800/pbr.20.142 |
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