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Strain Data
| Strain number | NIES-4060 | |||
|---|---|---|---|---|
| Phylum | Cercozoa | |||
| Class | Imbricatea | |||
| Scientific name | Paulinella micropora Lhee, Yang, Kim, Andersen & Yoon | |||
| Synonym | ||||
| Former name | ||||
| Common name | ||||
| Locality (Date of collection) | inside NIES, Onogawa, Tsukuba, Ibaraki, Japan (2009-10-09) | |||
| Latitude / Longitude | 36.0485 / 140.1190 | |||
| Habitat (Isolation source) | Freshwater (Pond water) | |||
| History | < Nomura, Mami | |||
| Isolator (Date of isolation) | Nomura, Mami (2009-10-09) | |||
| Identified by | Nomura, Mami | |||
| State of strain | Subculture; Unialgal; Clonal; Non-axenic | |||
|
Culture condition (Preculture condition) |
Medium:
Modified WarisH-Si
Temperature: 20 C Light intensity: 4-5 µmol photons/m2/sec, L/D cycle: 10L:14D Duration: 1 M |
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| Gene information | 16S rRNA ( LC384071 ) , pmSL1 ( LC384070 ) , LASP1 ( LC384069 ) , Rab11 ( LC384068 ) , CypA ( LC384067 ) , PsbN ( LC384066 ) , hypothetical protein ( LC384065 ) , Rab1 ( LC384064 ) , Rac1 ( LC384063 ) , CALM ( LC384062 LC384061 ) , polyubiquitin ( LC383946 ) , actin ( LC383945 ) | |||
| Cell size (min - max) | 15 - 20 μm | |||
| Organization | Unicellular | |||
| Characteristics | Benthic | |||
| Other strain no. | Other strain no. : MYN1 | |||
| Remarks | ||||
| Movie | ||||
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Related strain information
(Large number of orders and same genus or species)
|
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|---|---|---|---|---|
| Strain number | Scientific name | Common name | Habitat (Isolation source) | Characteristics |
|
NIES-2635 |
Paulinella chromatophora | Freshwater (Pond water) | Symbiotic ; Benthic | |
|
Related strain information
(Used in same reference)
|
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|---|---|---|---|---|
| Strain number | Scientific name | Common name | Habitat (Isolation source) | Characteristics |
|
NIES-277 |
Cryptomonas rostratiformis | Freshwater (Pond water) | ||
|
NIES-3576 |
Nitzschia sp. | Pennate diatom | Brackish water (Plant (Mangrove)) | Heterotrophic ; Benthic ; Nonphotosynthetic plastids ; Genome decoded strain (Kamikawa et al. 2018) |
|
NIES-2535 |
Skeletonema japonicum | Centric diatom | Marine (Seawater) | Red tide ; Planktonic |
|
NIES-2716 |
Hemiselmis andersenii | Marine (Seawater) | Genome decoded strain (Suzuki et al. 2022) | |
NIES-463
|
Glenodiniopsis uliginosa | Dinoflagellate | Freshwater (Pond water) | |
| Reference |
|---|
|
Matsuo, M., Katahata, A., Satoh, S., Matsuzaki, M., Nomura, M., Ishida, K. I., Inagaki, Y., Obokata, J.
2018
Characterization of spliced leader transsplicing in a photosynthetic rhizarian amoeba, Paulinella micropora, and its possible role in functional gene transfer.
PLoS One,
13,
e0200961 (article ID).
Strain(s): 4060 PubMed: 30024971 DOI: 10.1371/journal.pone.0200961 Nomura, M. & Ishida, K-I. 2016 Fine-structural observations on siliceous scale production and shell assembly in the testate amoeba Paulinella chromatophora. Protist, 167, 303-318. Keywords: Paulinella chromatophora; testate amoebae; siliceous scale production; silica deposition vesicle; shell construction; ultrastructure Strain(s): 4060 PubMed: 27348459 DOI: 10.1016/j.protis.2016.05.002 Nomura, M., Nakayama, T., Ishida, K-I. 2014 Detailed process of shell construction in the photosynthetic testate amoeba Paulinella chromatophora (Euglyphid, Rhizaria). J. Eucaryot. Microbiol., 61, 317-321. Keywords: cell covering; LysoTracker; protist; siliceous; scale; time-lapse video microscopy Strain(s): 4060 PubMed: 24444111 DOI: 10.1111/jeu.12102 Sato, N., Yoshitomi, T., Mori-Moriyama, N. 2020 Characterization and biosynthesis of lipids in Paulinella micropora MYN1. Evidence for efficient integration of chromatophores into cellular lipid metabolism. Plant Cell Physiol., 61, 869–881. Keywords: Paulinella micropora; Betaine lipid; chromatophore; endosymbiosis; lipid metabolism; metabolic flow Strain(s): 4060 PubMed: 32044983 DOI: 10.1093/pcp/pcaa011 Hamana, K., Furuchi, T., Hayashi, H., Niitsu, M. 2022 Additional polyamine analysis of algal chlorarachniophytes, euglenophytes, haptophytes, cryptophytes, dinoflagellates, chromerids and heterokontophytes. —Polyamine analysis of algae IV— Microb. Resour. Syst., 38, 51-62. Keywords: alga; chlorarachniophyte; chromerid; dinoflagellate; polyamine Strain(s): 12, 47, 48, 253, 274, 276, 277, 282, 286, 304, 331, 381, 387, 463, 623, 624, 699, 706, 715, 741, 1443, 2145, 2146, 2149, 2351, 2433, 2535, 2584, 2588, 2635, 2677, 2716, 2728, 2860, 3576, 3745, 4060, 4109, 4280, 4391, 4392 DOI: 10.60369/microresys.38.2_51 |
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