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Strain Data
| Strain number | NIES-4073 | |||
|---|---|---|---|---|
| Phylum | Cyanophyta | |||
| Class | Cyanophyceae | |||
| Scientific name | Scytonema sp. | |||
| Synonym | ||||
| Former name | ||||
| Common name | Blue-green alga ; Cyanobacteria | |||
| Locality (Date of collection) | Yokohama, Kanagawa, Japan (2004-**-**) | |||
| Latitude / Longitude | 35.36 / 139.56 | |||
| Habitat (Isolation source) | Terrestrial (Nostoc commune) | |||
| History | < Katoh, Hiroshi | |||
| Isolator (Date of isolation) | Katoh, Hiroshi (2012-**-**) | |||
| Identified by | Katoh, Hiroshi | |||
| State of strain | Cryopreservation; Unialgal; Clonal; Axenic[2017 May] | |||
|
Culture condition (Preculture condition) |
Medium:
MDM (agar)
Temperature: 20 C Light intensity: 6-10 µmol photons/m2/sec, L/D cycle: 10L:14D Duration: 2 M |
|||
| Gene information | nearly complete genome ( AP018268 ) , 16S rRNA ( AB694929 ) , Plasmid DNA ( AP018264-AP018267 ) | |||
| Cell size (min - max) | ||||
| Organization | Filamentous | |||
| Characteristics | Drought tolerance ; Nitrogen fixation (aerobic condition, Modified BG-110 medium) ; Genome decoded strain | |||
| Other strain no. | Other strain no. : YK-02 | |||
| Remarks | Cryopreserved; Axenic | |||
| Movie | ||||
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Related strain information
(Large number of orders and same genus or species)
|
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|---|---|---|---|---|
| Strain number | Scientific name | Common name | Habitat (Isolation source) | Characteristics |
|
NIES-1956 |
Scytonema javanicum | Blue-green alga ; Cyanobacteria | Terrestrial | Nitrogen fixation (aerobic condition, Modified BG-110 medium, N-Free medium) |
|
NIES-2130 |
Scytonema sp. | Blue-green alga ; Cyanobacteria | Terrestrial | Drought tolerance ; Nitrogen fixation (aerobic condition, Modified BG-110 medium, N-Free medium) ; Genome decoded strain (Zhu et al. 2017) |
|
Related strain information
(Used in same reference)
|
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|---|---|---|---|---|
| Strain number | Scientific name | Common name | Habitat (Isolation source) | Characteristics |
|
NIES-3755 |
Leptolyngbya sp. | Blue-green alga ; Cyanobacteria | Terrestrial (Soil) | Genome decoded strain (Hirose et al. 2016) |
|
NIES-37 |
Tolypothrix tenuis | Blue-green alga ; Cyanobacteria | Heterotrophic ; Nitrogen fixation (aerobic condition, Modified BG-110 medium, N-Free medium) ; Chromatic adaptation ; Material for studying on phycobilin production ; Material for studying on phycobilin production ; Genome decoded strain | |
NIES-3756
|
Nostoc sp. | Blue-green alga ; Cyanobacteria | Terrestrial (Water) | Genome decoded strain (Hirose et al. 2016) |
|
NIES-3757 |
Stanieria sp. | Blue-green alga ; Cyanobacteria | Terrestrial (Water) | Genome decoded strain |
|
NIES-4101 |
Calothrix sp. | Blue-green alga ; Cyanobacteria | Terrestrial (Sediment) | Genome decoded strain |
| Reference |
|---|
|
Johansen, JR., Mareš, J., Pietrasiak, N., Bohunická, M., Zima, J Jr., Štenclová, L., Hauer, T.
2017
Highly divergent 16S rRNA sequences in ribosomal operons of Scytonema hyalinum (Cyanobacteria).
PLoS One,
12,
e0186393 (article ID).
Strain(s): 2130, 4073 PubMed: 29073157 DOI: 10.1371/journal.pone.0186393 MacCready, J. S., Basalla, J. L., Vecchiarelli, A. G. 2020 Origin and evolution of carboxysome positioning systems in cyanobacteria. Mol. Biol. Evol., 37, 1434–1451. Strain(s): 21, 22, 25, 26, 30, 39, 44, 73, 87, 88, 267, 592, 806, 843, 932, 970, 2098, 2100, 2107, 2108, 2111, 2549, 3275, 3754, 3756, 3974, 4073, 4074, 4075, 4101, 4103, 4106 PubMed: 31899489 DOI: 10.1093/molbev/msz308 Baqué, M., Napoli, A., Fagliarone, C., Moeller, R., de Vera, J. P., Billi, D. 2020 Carotenoid raman signatures are better preserved in dried cells of the desert cyanobacterium Chroococcidiopsis than in hydrated counterparts after high-dose gamma irradiation. Life-Basel, 10, 83 (article ID). Keywords: biosignatures; extremophiles; ionizing radiation; Raman spectroscopy; cyanobacteria; Mars exploration Strain(s): 25, 2100, 4073, 4103, 4105 PubMed: 32521820 DOI: 10.3390/life10060083 Hirose, Y., Ohtsubo, Y., Misawa, N., Yonekawa, C., Nagao, N., Shimura, Y., Fujisawa, T., Kanesaki, Y., Katoh, H., Katayama, M., Yamaguchi, H., Yoshikawa, H., Ikeuchi, M., Eki, T., Nakamura, Y., Kawachi, M. 2021 Genome sequencing of the NIES Cyanobacteria collection with a focus on the heterocyst-forming clade. DNA Res., 28, dsab024 (article ID). Keywords: Cyanobacteria; genome; heterocyst; culture collection; taxonomy Strain(s): 19, 21, 22, 23, 25, 37, 50, 73, 267, 806, 932, 2098, 2100, 2107, 2109, 2111, 2130, 2135, 3275, 3585, 3757, 3974, 4070, 4073, 4074, 4075, 4101, 4102, 4103, 4106 PubMed: 34677568 DOI: 10.1093/dnares/dsab024 Tamre, E. & Fournier, G. P. 2022 Inferred ancestry of scytonemin biosynthesis proteins in cyanobacteria indicates a response to Paleoproterozoic oxygenation. Geobiology, 20, 764–775. Keywords: Bayesian phylogenetics; cyanobacteria; Paleoproterozoic; photoprotection; scytonemin; UVA radiation Strain(s): 21, 23, 25, 26, 267, 2108, 2111, 3756, 4073, 4074, 4075, 4103 PubMed: 35851984 DOI: 10.1111/gbi.12514 Arsın, S., Delbaje, E., Jokela, J., Wahlsten, M., Farrar, Z. M., Permi, P., Fewer, D. 2023 A plastic biosynthetic pathway for the production of structurally distinct microbial sunscreens. ACS Chem. Biol., 18, 1959–1967. Strain(s): 25, 73, 267, 2100, 2107, 2109, 2111, 2130, 3755, 3756, 3757, 3974, 4073, 4102, 4103, 4105, 4106 PubMed: 37603862 DOI: 10.1021/acschembio.3c00112 Nowruzi, B., Hutarova, L., Vešelenyiova, D., Metcalf, J. S. 2024 Characterization of Neowestiellopsis persica A1387 (Hapalosiphonaceae) based on the cpcA, psbA, rpoC1, nifH and nifD gene sequences. BMC Ecol. Evol., 24, 57 (article ID). Keywords: Cyanobacteria; Phylogenetic analysis; Neowestiellopsis persica, cpcA Strain(s): 21, 22, 23, 25, 50, 73, 267, 592, 2098, 2100, 2107, 3275, 3754, 3756, 3974, 4073, 4074, 4101, 4103, 4106 PubMed: 38711016 DOI: 10.1186/s12862-024-02244-z |
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