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Strain Data
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| Strain number | NIES-4076 | |||
|---|---|---|---|---|
| Phylum | Dinophyta | |||
| Class | Dinophyceae | |||
| Scientific name | Symbiodinium sp. | |||
| Synonym | ||||
| Former name | ||||
| Common name | Dinoflagellate ; Zooxanthellae | |||
| Locality (Date of collection) | Okinawa, Japan | |||
| Latitude / Longitude | ||||
| Habitat (Isolation source) | Marine (Cardiid clam (Tridacna crocea)) | |||
| History | < Shoguchi, Eiichi < Hidaka, Michio < Yamasu, Terufumi | |||
| Isolator (Date of isolation) | Yamasu, Terufumi | |||
| Identified by | Hidaka, Michio | |||
| State of strain | Subculture; Clonal; Axenic[2024 Dec] | |||
|
Culture condition (Preculture condition) |
Medium:
f/2
Temperature: 20 C Light intensity: 6 µmol photons/m2/sec, L/D cycle: 10L:14D Duration: 2 M |
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| Gene information | Whole-genome ( BGNK00000000 ) | |||
| Cell size (min - max) | ||||
| Organization | Unicellular | |||
| Characteristics | Symbiotic （clam） ; Genome decoded strain (Shoguchi et al. 2018) ; Clade A | |||
| Other strain no. | Other strain no. : Y106 | |||
| Remarks | Axenic | |||
| Movie | ||||
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Related strain information
(Large number of orders and same genus or species)
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|---|---|---|---|---|
| Strain number | Scientific name | Common name | Habitat (Isolation source) | Characteristics |
|
NIES-2640 |
Symbiodinium sp. | Dinoflagellate ; Zooxanthellae | Marine (Sand) | Benthic ; Symbiotic ; Clade A |
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NIES-2641 |
Symbiodinium sp. | Dinoflagellate ; Zooxanthellae | Marine (Sand) | Benthic ; Symbiotic ; Clade A |
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NIES-2643 |
Symbiodinium sp. | Dinoflagellate ; Zooxanthellae | Marine (Sand) | Benthic ; Symbiotic ; Clade A |
|
NIES-2638 |
Symbiodinium sp. | Dinoflagellate ; Zooxanthellae | Marine (Sand) | Benthic ; Symbiotic ; Clade A |
|
NIES-2639 |
Symbiodinium sp. | Dinoflagellate ; Zooxanthellae | Marine (Sand) | Benthic ; Symbiotic ; Clade A |
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Related strain information
(Whose relevance due to simultaneous purchases and other information is inferred by AI)
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|---|---|---|---|---|
| Strain number | Scientific name | Common name | Habitat (Isolation source) | Characteristics |
|
NIES-2746 |
Symbiodinium sp. | Dinoflagellate ; Zooxanthellae | Marine (Enriched sample of jellyfish (Aiptasia sp.) tissue) | Benthic ; Symbiotic (jellyfish) |
|
NIES-2642 |
Symbiodinium sp. | Dinoflagellate ; Zooxanthellae | Marine (Sand) | Benthic ; Symbiotic ; Clade A |
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Related strain information
(Used in same reference)
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|---|---|---|---|---|
| Strain number | Scientific name | Common name | Habitat (Isolation source) | Characteristics |
|
NIES-2907 |
Durusdinium trenchii | Dinoflagellate ; Zooxanthellae | Marine (coral host: Favia speciosa) | Symbiotic (corals) ; Clade D1 |
|
NIES-4077 |
Cladocopium sp. | Dinoflagellate ; Zooxanthellae | Marine (Cardiid clam （Fragum sp.）) | Symbiotic (cockle) ; Genome decoded strain (Shoguchi et al. 2018) ; Clade C |
NIES-3808
|
Breviolum minutum | Dinoflagellate ; Zooxanthellae | Marine (Coral) | Symbiotic (corals) ; Genome decoded strain (Shoguchi et al. 2013) ; Clade B |
| Reference |
|---|
|
Shoguchi, E., Beedessee, G., Tada, I., Hisata, K., Kawashima, T., Takeuchi, T., Arakaki, N., Fujie, M., Koyanagi, R., Roy, M. C., Kawachi, M., Hidaka, M., Satoh, N., Shinzato, C.
2018
Two divergent Symbiodinium genomes reveal conservation of a gene cluster for sunscreen biosynthesis and recently lost genes.
BMC Genomics,
19,
458 (article ID).
Keywords: Dinoflagellates; Evolutionary genomics; Symbiodinium; Mycosporine-like amino acids; Symbiosis Strain(s): 4076, 4077 PubMed: 29898658 DOI: 10.1186/s12864-018-4857-9 Ripken, C., Khalturin, K., Shoguchi, E. 2020 Response of coral reef dinoglagellates to nanoplastics under experimental conditions suggests downregulation of cellular metabolism. Microorganisms, 8, 1759 (article ID). Keywords: nanoplastics; dinoflagellate; coral reef; Symbiodinium; Cladocopium; gene expression Strain(s): 4076, 4077 PubMed: 33182359 DOI: 10.3390/microorganisms8111759 Shoguchi, E., Kawachi, M., Shinzato, C., Beedessee, G. 2024 Functional analyses of bacterial genomes found in Symbiodiniaceae genome assemblies. Environ. Microbiol. Rep., 16, e13238 (article ID). Strain(s): 2907, 3808, 4076, 4077 PubMed: 38444256 DOI: 10.1111/1758-2229.13238 |
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