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Strain Data
| Strain number | NIES-4101 | |||
|---|---|---|---|---|
| Phylum | Cyanophyta | |||
| Class | Cyanophyceae | |||
| Scientific name | Calothrix sp. | |||
| Synonym | ||||
| Former name | ||||
| Common name | Blue-green alga ; Cyanobacteria | |||
| Locality (Date of collection) | Mimomi Hongo Park, Narashino, Chiba, Japan (2008-05-01) | |||
| Latitude / Longitude | 35.683299 / 140.065562 | |||
| Habitat (Isolation source) | Terrestrial (Sediment) | |||
| History | < Hirose, Yuu < Katayama, Mitsunori | |||
| Isolator (Date of isolation) | Katayama, Mitsunori (2008-06-01) | |||
| Identified by | Katayama, Mitsunori | |||
| State of strain | Cryopreservation; Unialgal; Clonal; Axenic[2017 May] | |||
|
Culture condition (Preculture condition) |
Medium:
BG-11 (agar)
Temperature: 20 C Light intensity: 7 µmol photons/m2/sec, L/D cycle: 10L:14D Duration: 2 M |
|||
| Gene information | Whole-genome ( AP018280 ) , Plasmid DNA ( AP018275-AP018279 ) | |||
| Cell size (min - max) | ||||
| Organization | Filamentous | |||
| Characteristics | Genome decoded strain | |||
| Other strain no. | Other strain no. : CIT012 | |||
| Remarks | Cryopreserved; Axenic | |||
| Movie | ||||
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Related strain information
(Large number of orders and same genus or species)
|
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|---|---|---|---|---|
| Strain number | Scientific name | Common name | Habitat (Isolation source) | Characteristics |
|
NIES-3974 |
Calothrix sp. | Blue-green alga ; Cyanobacteria | Hot spring (Stream Sediment) | Genome decoded strain |
|
NIES-4105 |
Calothrix sp. | Blue-green alga ; Cyanobacteria | Terrestrial (Concrete fence) | Nitrogen fixation ; Attached ; Genome decoded strain |
|
NIES-2098 |
Calothrix sp. | Blue-green alga ; Cyanobacteria | Nitrogen fixation (aerobic condition, Modified BG-110 medium, N-Free medium) ; Genome decoded strain | |
|
NIES-2099 |
Calothrix sp. | Blue-green alga ; Cyanobacteria | Nitrogen fixation (aerobic condition, Modified BG-110 medium, N-Free medium) | |
|
NIES-2100 |
Calothrix sp. | Blue-green alga ; Cyanobacteria | Nitrogen fixation (aerobic condition, Modified BG-110 medium, N-Free medium) ; Genome decoded strain | |
|
Related strain information
(Whose relevance due to simultaneous purchases and other information is inferred by AI)
|
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|---|---|---|---|---|
| Strain number | Scientific name | Common name | Habitat (Isolation source) | Characteristics |
|
NIES-22 |
Calothrix brevissima | Blue-green alga ; Cyanobacteria | Freshwater (Soil) | Nitrogen fixation (aerobic condition, Modified BG-110 medium, N-Free medium) ; Chromatic adaptation |
|
NIES-2101 |
Calothrix sp. | Blue-green alga ; Cyanobacteria | Terrestrial | Drought tolerance ; Nitrogen fixation (aerobic condition, Modified BG-110 medium, N-Free medium) ; Genome decoded strain (Zhu et al. 2017) |
NIES-267
|
Calothrix parasitica | Blue-green alga ; Cyanobacteria | Marine (Seaweed) | Endophyte in Nemalion (Rhodophyceae) ; Genome decoded strain |
|
Related strain information
(Used in same reference)
|
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|---|---|---|---|---|
| Strain number | Scientific name | Common name | Habitat (Isolation source) | Characteristics |
|
NIES-2135 |
Leptolyngbya boryana | Blue-green alga ; Cyanobacteria | Genome decoded strain | |
|
NIES-25 |
Desmonostoc sp. | Blue-green alga ; Cyanobacteria | Genome decoded strain | |
|
NIES-19 |
Anabaena cylindrica | Blue-green alga ; Cyanobacteria | ||
|
NIES-37 |
Tolypothrix tenuis | Blue-green alga ; Cyanobacteria | Heterotrophic ; Nitrogen fixation (aerobic condition, Modified BG-110 medium, N-Free medium) ; Chromatic adaptation ; Material for studying on phycobilin production ; Material for studying on phycobilin production ; Genome decoded strain | |
|
NIES-4074 |
Cylindrospermum sp. | Blue-green alga ; Cyanobacteria | Terrestrial (Soil) | Nitrogen fixation (aerobic condition, Modified BG-110 medium, N-Free medium) ; Genome decoded strain |
| Reference |
|---|
|
MacCready, J. S., Basalla, J. L., Vecchiarelli, A. G.
2020
Origin and evolution of carboxysome positioning systems in cyanobacteria.
Mol. Biol. Evol.,
37,
1434–1451.
Strain(s): 21, 22, 25, 26, 30, 39, 44, 73, 87, 88, 267, 592, 806, 843, 932, 970, 2098, 2100, 2107, 2108, 2111, 2549, 3275, 3754, 3756, 3974, 4073, 4074, 4075, 4101, 4103, 4106 PubMed: 31899489 DOI: 10.1093/molbev/msz308 Hirose, Y., Ohtsubo, Y., Misawa, N., Yonekawa, C., Nagao, N., Shimura, Y., Fujisawa, T., Kanesaki, Y., Katoh, H., Katayama, M., Yamaguchi, H., Yoshikawa, H., Ikeuchi, M., Eki, T., Nakamura, Y., Kawachi, M. 2021 Genome sequencing of the NIES Cyanobacteria collection with a focus on the heterocyst-forming clade. DNA Res., 28, dsab024 (article ID). Keywords: Cyanobacteria; genome; heterocyst; culture collection; taxonomy Strain(s): 19, 21, 22, 23, 25, 37, 50, 73, 267, 806, 932, 2098, 2100, 2107, 2109, 2111, 2130, 2135, 3275, 3585, 3757, 3974, 4070, 4073, 4074, 4075, 4101, 4102, 4103, 4106 PubMed: 34677568 DOI: 10.1093/dnares/dsab024 Nowruzi, B., Hutarova, L., Vešelenyiova, D., Metcalf, J. S. 2024 Characterization of Neowestiellopsis persica A1387 (Hapalosiphonaceae) based on the cpcA, psbA, rpoC1, nifH and nifD gene sequences. BMC Ecol. Evol., 24, 57 (article ID). Keywords: Cyanobacteria; Phylogenetic analysis; Neowestiellopsis persica, cpcA Strain(s): 21, 22, 23, 25, 50, 73, 267, 592, 2098, 2100, 2107, 3275, 3754, 3756, 3974, 4073, 4074, 4101, 4103, 4106 PubMed: 38711016 DOI: 10.1186/s12862-024-02244-z Umesaka, K., Banba, M., Chiba, S., Fujita, Y. 2024 Restoration of the functional nif gene cluster by complex recombination events during heterocyst development in the nitrogen-fixing cyanobacterium Calothrix sp. NIES-4101. Plant Cell Physiol., 65, 1050-1064. Keywords: Calothrix sp. NIES-4101; Cyanobacteria; Differentiation; Heterocysts; nif Strain(s): 4101 PubMed: 38305573 DOI: 10.1093/pcp/pcae011 |
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