Strain Data

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Strain number		NIES-4391
Phylum		Chromerida
Class		Chromerida
Scientific name		Chromera velia R.B.Moore et al.
Synonym
Former name
Common name
Locality (Date of collection)		Syndey Harbor, New South Wales, Australia (2001-12-07)
Latitude / Longitude		/ 151.2789
Habitat (Isolation source)		Marine (Coral (Plesiastrea versipora))
History		< CCAP (2019);
Isolator (Date of isolation)		Moore, Robert B. (2001-12-13)
Identified by		Moore, Robert B.
State of strain		Cryopreservation; Unialgal; Clonal; Non-axenic
Culture condition (Preculture condition)		Medium: f/2 Temperature: 20 C Light intensity: 21-31 µmol photons/m²/sec, L/D cycle: 10L:14D Duration: 1 M
Gene information		Whole-genome ( ARZB00000000 ) , Plastid genome ( HM222967 )
Cell size (min - max)		2 - 4 μm
Organization		Unicellular; Coccoid; Unflagellated
Characteristics		Authentic strain (Moore et al. 2008)
Other strain no.		Other collection strain no. : CCAP 1602/1; CCMP2878 Other strain no. : RM12; nQAIF136
Remarks		Cryopreserved
Movie

Related strain information (Used in same reference)
Strain number	Scientific name	Common name	Habitat (Isolation source)	Characteristics
NIES-699	Rhodomonas atrorosea		Marine	Authentic strain
NIES-4109	Viridiuvalis adhaerens		Marine (the mucus covering a coral)	Benthic ; Authentic strain (Shiratori et al. 2017)
NIES-276	Cryptomonas borealis		Freshwater (Pond water)	Genome decoded strain (Suzuki et al. 2022)
NIES-2860	Vacuoliviride crystalliferum		Freshwater (Paste)	Benthic ; Authentic strain (Nakayama et al. 2015)
NIES-3576	Nitzschia sp.	Pennate diatom	Brackish water (Plant (Mangrove))	Heterotrophic ; Benthic ; Nonphotosynthetic plastids ; Genome decoded strain (Kamikawa et al. 2018)

Reference
Moore, R. B., Oborník, M., Janouskovec, J., Chrudimský, T., Vancová, M., Green, D. H., Wright, S. W., Davies, N. W., Bolch, C. J., Heimann, K., Slapeta, J., Hoegh-Guldberg, O., Logsdon, J. M., Carter, D. A. 2008 A photosynthetic alveolate closely related to apicomplexan parasites. Nature, 451, 959-963. Strain(s): 4391 PubMed: 18288187 DOI: 10.1038/nature06635 Oborník, M., Vancová, M., Lai, D. H., Janouškovec, J., Keeling, P. J., Lukeš, J. 2011 Morphology and ultrastructure of multiple life cycle stages of the photosynthetic relative of apicomplexa, Chromera velia. Protist, 162, 115-130. Strain(s): 4391 PubMed: 20643580 DOI: 10.1016/j.protis.2010.02.004 Dorrell, R. G., Drew, J., Nisbet, R. E., Howe, C. J. 2014 Evolution of chloroplast transcript processing in Plasmodium and its chromerid algal relatives. PLoS Genet., 10, e1004008 (article ID). Strain(s): 4391 PubMed: 24453981 DOI: 10.1371/journal.pgen.1004008 Petersen, J., Ludewig, A. K., Michael, V., Bunk, B., Jarek, M., Baurain, D., Brinkmann, H. 2014 Chromera velia, endosymbioses and the rhodoplex hypothesis--plastid evolution in cryptophytes, alveolates, stramenopiles, and haptophytes (CASH lineages). Genome Biol. Evol., 6, 666-684. Keywords: next-generation sequencing; eukaryote-to-eukaryote endosymbioses; horizontal and endosymbiotic gene transfer; chromalveolate hypothesis; long-branch attraction artifacts Strain(s): 4391 PubMed: 24572015 DOI: 10.1093/gbe/evu043 Ludewig-Klingner, A. K., Michael, V., Jarek, M., Brinkmann, H., Petersen, J. 2018 Distribution and evolution of peroxisomes in alveolates (Apicomplexa, Dinoflagellates, Ciliates). Genome Biol. Evol., 10, 1-13. Keywords: Vitrella brassicaformis; Toxoplasma gondii; glyoxylate cycle; diagnostic peroxins; catalase; phylogeny Strain(s): 4391 PubMed: 29202176 DOI: 10.1093/gbe/evx250 Janouskovec, J., Horák, A., Oborník, M., Lukes, J., Keeling, P. J. 2010 A common red algal origin of the apicomplexan, dinoflagellate, and heterokont plastids. Proc. Natl. Acad. Sci. U. S. A., , 10949-10954. Keywords: Apicomplexa: Chromera velia: CCMP3155: plastid evolution: chloroplast genome Strain(s): 4391 PubMed: 20534454 DOI: 10.1073/pnas.1003335107 Hamana, K., Furuchi, T., Hayashi, H., Niitsu, M. 2022 Additional polyamine analysis of algal chlorarachniophytes, euglenophytes, haptophytes, cryptophytes, dinoflagellates, chromerids and heterokontophytes. —Polyamine analysis of algae IV— Microb. Resour. Syst., 38, 51-62. Keywords: alga; chlorarachniophyte; chromerid; dinoflagellate; polyamine Strain(s): 12, 47, 48, 253, 274, 276, 277, 282, 286, 304, 331, 381, 387, 463, 623, 624, 699, 706, 715, 741, 1443, 2145, 2146, 2149, 2351, 2433, 2535, 2584, 2588, 2635, 2677, 2716, 2728, 2860, 3576, 3745, 4060, 4109, 4280, 4391, 4392 DOI: 10.60369/microresys.38.2_51

Reference

Moore, R. B., Oborník, M., Janouskovec, J., Chrudimský, T., Vancová, M., Green, D. H., Wright, S. W., Davies, N. W., Bolch, C. J., Heimann, K., Slapeta, J., Hoegh-Guldberg, O., Logsdon, J. M., Carter, D. A. 2008 A photosynthetic alveolate closely related to apicomplexan parasites. Nature, 451, 959-963.
Strain(s): 4391
PubMed: 18288187
DOI: 10.1038/nature06635

Oborník, M., Vancová, M., Lai, D. H., Janouškovec, J., Keeling, P. J., Lukeš, J. 2011 Morphology and ultrastructure of multiple life cycle stages of the photosynthetic relative of apicomplexa, Chromera velia. Protist, 162, 115-130.
Strain(s): 4391
PubMed: 20643580
DOI: 10.1016/j.protis.2010.02.004

Dorrell, R. G., Drew, J., Nisbet, R. E., Howe, C. J. 2014 Evolution of chloroplast transcript processing in Plasmodium and its chromerid algal relatives. PLoS Genet., 10, e1004008 (article ID).
Strain(s): 4391
PubMed: 24453981
DOI: 10.1371/journal.pgen.1004008

Petersen, J., Ludewig, A. K., Michael, V., Bunk, B., Jarek, M., Baurain, D., Brinkmann, H. 2014 Chromera velia, endosymbioses and the rhodoplex hypothesis--plastid evolution in cryptophytes, alveolates, stramenopiles, and haptophytes (CASH lineages). Genome Biol. Evol., 6, 666-684.
Keywords: next-generation sequencing; eukaryote-to-eukaryote endosymbioses; horizontal and endosymbiotic gene transfer; chromalveolate hypothesis; long-branch attraction artifacts
Strain(s): 4391
PubMed: 24572015
DOI: 10.1093/gbe/evu043

Ludewig-Klingner, A. K., Michael, V., Jarek, M., Brinkmann, H., Petersen, J. 2018 Distribution and evolution of peroxisomes in alveolates (Apicomplexa, Dinoflagellates, Ciliates). Genome Biol. Evol., 10, 1-13.
Keywords: Vitrella brassicaformis; Toxoplasma gondii; glyoxylate cycle; diagnostic peroxins; catalase; phylogeny
Strain(s): 4391
PubMed: 29202176
DOI: 10.1093/gbe/evx250

Janouskovec, J., Horák, A., Oborník, M., Lukes, J., Keeling, P. J. 2010 A common red algal origin of the apicomplexan, dinoflagellate, and heterokont plastids. Proc. Natl. Acad. Sci. U. S. A., , 10949-10954.
Keywords: Apicomplexa: Chromera velia: CCMP3155: plastid evolution: chloroplast genome
Strain(s): 4391
PubMed: 20534454
DOI: 10.1073/pnas.1003335107

Hamana, K., Furuchi, T., Hayashi, H., Niitsu, M. 2022 Additional polyamine analysis of algal chlorarachniophytes, euglenophytes, haptophytes, cryptophytes, dinoflagellates, chromerids and heterokontophytes. —Polyamine analysis of algae IV— Microb. Resour. Syst., 38, 51-62.
Keywords: alga; chlorarachniophyte; chromerid; dinoflagellate; polyamine
Strain(s): 12, 47, 48, 253, 274, 276, 277, 282, 286, 304, 331, 381, 387, 463, 623, 624, 699, 706, 715, 741, 1443, 2145, 2146, 2149, 2351, 2433, 2535, 2584, 2588, 2635, 2677, 2716, 2728, 2860, 3576, 3745, 4060, 4109, 4280, 4391, 4392
DOI: 10.60369/microresys.38.2_51

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