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Strain Data
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| Strain number | NIES-4392 | |||
|---|---|---|---|---|
| Phylum | Heterokontophyta | |||
| Class | Bacillariophyceae | |||
| Scientific name | Phaeodactylum tricornutum Bohlin | |||
| Synonym | Nitzschia closterium f. minutissima Allen & Nelson 1910 | |||
| Former name | ||||
| Common name | Pennate diatom | |||
| Locality (Date of collection) | off Blackpool, England, U.K. (1956-**-**) | |||
| Latitude / Longitude | 54 / | |||
| Habitat (Isolation source) | Marine (Seawater) | |||
| History | < CCAP (2019); | |||
| Isolator (Date of isolation) | De Martino & Ten-Hage (2003-**-**) | |||
| Identified by | Coughlam | |||
| State of strain | Subculture / Cryopreservation; Unialgal; Clonal; Axenic[2020 Sept] | |||
|
Culture condition (Preculture condition) |
Medium:
f/2
Temperature: 20 C Light intensity: 31 µmol photons/m2/sec, L/D cycle: 10L:14D Duration: 40 D |
|||
| Gene information | Whole-genome ( ABQD00000000 ) , Mitochondrial genome ( HQ840789 ) , Plastid genome ( EF067920 ) | |||
| Cell size (min - max) | 2 - 15 μm | |||
| Organization | Unicellular | |||
| Characteristics | Genome decoded strain (Bowler et al. 2008) | |||
| Other strain no. |
Other collection strain no. : CCAP 1055/1; CCMP632; CCMP2561
Other strain no. : Pt1 8.6; Pt Gen |
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| Remarks | Axenic | |||
| Movie | ||||
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Related strain information
(Used in same reference)
|
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|---|---|---|---|---|
| Strain number | Scientific name | Common name | Habitat (Isolation source) | Characteristics |
|
NIES-4280 |
Mayamaea pseudoterrestris | Pennate diatom | Terrestrial | Test strain for algal growth inhibition test (OECD TG201) ; Authentic strain (Tuji et al. 2021) ; Type specimen (NIES-50023, Isotype) ; Genome decoded strain (Suzuki et al. 2022) |
NIES-48
|
Euglena gracilis | Material for Vitamin B12 bioassay | ||
|
NIES-2716 |
Hemiselmis andersenii | Marine (Seawater) | Genome decoded strain (Suzuki et al. 2022) | |
|
NIES-253 |
Euglena clara | Freshwater (River sediment) | ||
NIES-2433
|
Norrisiella sphaerica | Marine (Seaweed) | ||
| Reference |
|---|
|
Santaeufemia, S., Abalde, J., Torres, E.
2019
Eco-friendly rapid removal of triclosan from seawater using biomass of a microalgal species: Kinetic and equilibrium studies.
J. Hazard. Mater.,
369,
674-683.
Keywords: Sorption; Phaeodactylum tricornutum; Removal; Kinetic Strain(s): 4392 PubMed: 30826560 DOI: 10.1016/j.jhazmat.2019.02.083 Bowler, C. et al. 2008 The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Nature, 456, 39–244. Keywords: Stramenopile; Heterokont; Direct repeats; Translational frameshift; Gene fusion; Hairpin elements Strain(s): 4392 PubMed: 18923393 DOI: 10.1038/nature07410 Oudot-Le Secq, M. P., Green, B. R. 2011 Complex repeat structures and novel features in the mitochondrial genomes of the diatoms Phaeodactylum tricornutum and Thalassiosira pseudonana. Gene, 476, 20-26. Keywords: Stramenopile; Heterokont; Direct repeats; Translational frameshift; Gene fusion; Hairpin elements Strain(s): 4392 PubMed: 21320580 DOI: 10.1016/j.gene.2011.02.001 Oudot-Le Secq, M. P., Grimwood, J., Shapiro, H., Armbrust, E. V., Bowler, C., Green, B. 2007 Chloroplast genomes of the diatoms Phaeodactylum tricornutum and Thalassiosira pseudonana: comparison with other plastid genomes of the red lineage. Mol. Genet. Genomics, 277, 427–439. Keywords: Chloroplast; Plastid; Genome; Secondary endosymbiosis; Diatom Strain(s): 4392 PubMed: 17252281 DOI: 10.1007/s00438-006-0199-4 Sun, L., Chin, W. C., Chiu, M. H., Xu, C., Lin, P., Schwehr, K. A., Quigg, A., Santschi, P. H. 2019 Sunlight induced aggregation of dissolved organic matter: Role ofproteins in linking organic carbon and nitrogen cycling in seawater. Sci. Total Environ., 654, 872-877. Keywords: Protein; Photo-flocculation; ROS; DOM Strain(s): 4392 PubMed: 30453257 DOI: 10.1016/j.scitotenv.2018.11.140 Hamana, K., Furuchi, T., Hayashi, H., Niitsu, M. 2022 Additional polyamine analysis of algal chlorarachniophytes, euglenophytes, haptophytes, cryptophytes, dinoflagellates, chromerids and heterokontophytes. —Polyamine analysis of algae IV— Microb. Resour. Syst., 38, 51-62. Keywords: alga; chlorarachniophyte; chromerid; dinoflagellate; polyamine Strain(s): 12, 47, 48, 253, 274, 276, 277, 282, 286, 304, 331, 381, 387, 463, 623, 624, 699, 706, 715, 741, 1443, 2145, 2146, 2149, 2351, 2433, 2535, 2584, 2588, 2635, 2677, 2716, 2728, 2860, 3576, 3745, 4060, 4109, 4280, 4391, 4392 DOI: 10.60369/microresys.38.2_51 |
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