Strain Data

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Strain number		NIES-763
Phylum		Glaucophyta
Class		Glaucophyceae
Scientific name		Cyanophora kugrensii Tos.Takah. & Nozaki
Synonym
Former name		Cyanophora paradoxa Korshikov
Common name
Locality (Date of collection)		Yoshino Park, Mitsukaido, Ibaraki, Japan (1987-01-17)
Latitude / Longitude		36.075731 / 140.001211
Habitat (Isolation source)		Freshwater (Soil)
History		< Suda, Shoichiro
Isolator (Date of isolation)		Suda, Shoichiro (1991-08-24)
Identified by		Takahashi, Toshiyuki
State of strain		Subculture; Unialgal; Clonal; Axenic[2017 Dec]
Culture condition (Preculture condition)		Medium: CSi Temperature: 20 C Light intensity: 6 µmol photons/m²/sec, L/D cycle: 10L:14D Duration: 2 M
Gene information		Mitochondrial genome ( KM198930 ) , cyanelle genome ( KM198929 ) , 16S rRNA ( LN735195 ) , 18S rRNA ( KF631377 ) , 18S-ITS1-5.8S-ITS2 ( KF631372 ) , ITS1-5.8S-ITS2 ( AB973921 ) , CO1 ( AB491672 KF631389 ) , cob ( KF631343 ) , psbA ( KF631322 ) , psaB ( AB973449 ) , rbcL ( KF631393 )
Cell size (min - max)		- 17 μm
Organization
Characteristics		Authentic strain (Takahashi et al. 2014)
Other strain no.		Other strain no. : S117
Remarks		Axenic
Movie

Related strain information (Large number of orders and same genus or species)
Strain number	Scientific name	Common name	Habitat (Isolation source)	Characteristics
NIES-547	Cyanophora paradoxa		Freshwater (Lake water)	alkalophilic
NIES-764	Cyanophora sudae		Freshwater (Soil)	Authentic strain (Takahashi et al. 2014) ; Genome decoded strain (Reyes-Prieto et al, 2018;（ Russell et al. 2021)
NIES-3645	Cyanophora cuspidata		Freshwater (Paddy soil)	Phototaxis ; Authentic strain (Takahashi et al. 2014)

Related strain information (Used in same reference)
Strain number	Scientific name	Common name	Habitat (Isolation source)	Characteristics
NIES-274	Cryptomonas ovata		Freshwater (Pond water)
NIES-1467	Nemalionopsis tortuosa	Red alga	Freshwater	Shade plant type ; Attached ; Epilithic ; CR+EN
NIES-3377	Cyanidioschyzon merolae	Red alga	Hot spring (Water)	Planktonic ; Thermophilic (opt. 40-45℃（) ; Acidophilic (pH 1.5-2.4) ; Phototaxic ; Genome decoded strain
NIES-966	Glaucocystis oocystiformis		Freshwater (Pond water)
NIES-1441	Percolomonas sp.		Marine (Seawater)	Heterotrophic ; Phagotrophic

Reference
Hamana, K. & Niitsu, M. 2006 Cellular polyamines of lower eukaryotes belonging to the phyla Glaucophyta, Rhodophyta, Cryptophyta, Haptophyta and Percolozoa. J. Gen. Appl. Microbiol., 52, 235-240. Keywords: Cryptophyta; Glaucophyta; Haptophyta; Perclozoa; polyamine; Rhodophyta Strain(s): 8, 274, 276, 277, 282, 353, 388, 699, 706, 715, 741, 763, 764, 1016, 1017, 1032, 1036, 1332, 1441, 1456, 1457, 1462, 1463, 1467, 1473, 3377 PubMed: 17116972 DOI: 10.2323/jgam.52.235 Nakajima, N., Teramoto, T., Kasai, F., Sano, T., Tamaoki, M., Aono, M., Kubo, A., Kamada, H., Azumi, Y., Saji, H. 2007 Glycosylation of bisphenol A by freshwater microalgae. Chemosphere, 69, 934-941. Keywords: Metabolite; Glucoside; Galactoside; Endocrine disruptors Strain(s): 35, 94, 96, 151, 245, 424, 468, 763 PubMed: 17629547 DOI: 10.1016/j.chemosphere.2007.05.088 Chong, J., Jackson, C., Kim, J. I., Yoon, H. S., Reyes-Prieto, A. 2014 Molecular markers from different genomic compartments reveal cryptic diversity within glaucophyte species. Mol. Phylogenet. Evol., 76, 181-188. Keywords: Glaucophyta; Cyanophora; Glaucocystis; Cryptic species diversity; Archaeplastida Strain(s): 763, 764, 966, 1369, 1961 PubMed: 24680917 DOI: 10.1016/j.ympev.2014.03.019 Smith, D. R., Jackson, C. J., Reyes-Prieto, A. 2014 Nucleotide substitution analyses of the glaucophyte Cyanophora suggest an ancestrally lower mutation rate in plastid vs mitochondrial DNA for the Archaeplastida. Mol. Phylogenet. Evol., 79, 380-384. Keywords: Plastid genome; Cyanelle; Genetic diversity; Organelle genome; Nucleotide substitution Strain(s): 763 PubMed: 25017510 DOI: 10.1016/j.ympev.2014.07.001 Takahashi, T., Sato, M., Toyooka, K., Matsuzaki, R., Kawafune, K., Kawamura, M., Okuda,K., Nozaki, H. 2014 Five Cyanophora (Cyanophorales, Glaucophyta) species delineated based on morphological and molecular data. J. Phycol., 50, 1058-1069. Keywords: Cyanophora; field-emission scanning electron microscopy; freeze-fracture method; Glaucophyta; molecular phylogeny; morphology; new species; secondary structure of nuclear rDNA ITS-2; taxonomy; ultrastructure Strain(s): 547, 763, 764, 3645 PubMed: 26988787 DOI: 10.1111/jpy.12236 Decelle, J., Romac, S., Stern, R. F., Bendif, E., Zingone, A., Audic, S., Guiry, M. D., Guillou, L., Tessier, D., Le Gall, F., Gourvil, P., Dos Santos, A. L., Probert, I., Vaulot, D., de Vargas, C., Christen, R. 2015 PhytoREF: a reference database of the plastidial 16S rRNAgene of photosynthetic eukaryotes with curated taxonomy. Mol. Ecol. Resour., 15, 1435-1445. Keywords: high-throughput sequencing; metabarcoding; photosynthesis; phytoplankton; plastidial 16S rRNA gene; protists Strain(s): 763, 764, 2565 PubMed: 25740460 DOI: 10.1111/1755-0998.12401 Russell, S., Jackson, C., Reyes-Prieto, A. 2021 High sequence divergence but limited architectural rearrangements in organelle genomes of Cyanophora (Glaucophyta) species. J. Eukaryot. Microbiol., 68, e12831 (article ID). Keywords: Archaeplastida; genomic distance; glauco-phytes; mitochondria; organelle genomics; plastid; substitution rates Strain(s): 763, 764 PubMed: 33142007 DOI: 10.1111/jeu.12831 Price, D. C., Steiner, J. M., Yoon, H. S., Bhattacharya, D., Löffelhardt, W. 2017 Glaucophyta In Handbook of the protists, 2nd ed. , Eds. by Archibald, J. M., Simpson, A. G. B., Slamovits, C. H., Springer, pp. 1-65. Keywords: Archaeplastida; Cyanophora paradoxa; Muroplasts; Single primary endosymbiotic event; Phylogenomics; Carbon-concentrating mechanism; Eukaryotic peptidoglycan; Phycobilisomes Strain(s): 547, 763, 764, 966, 1369, 1961, 2141, 3645 DOI: 10.1007/978-3-319-32669-6_42-1 Reyes-Prieto, A., Russell, S., Figueroa-Martinez, F., Jackson, C. 2018 Chapter Four - Comparative Plastid Genomics of Glaucophytes. In Plastid Genome Evolution - Advances in Botanical Research, Eds. by Chaw, S.-M., Jansen, R. K., Academic press 85, pp. 95-127. Keywords: Glaucophyta; Cyanophora; Glaucocystis; Archaeplastida; Plastid; Plastid genome; HGT Strain(s): 763, 764 DOI: 10.1016/bs.abr.2017.11.012

Reference

Hamana, K. & Niitsu, M. 2006 Cellular polyamines of lower eukaryotes belonging to the phyla Glaucophyta, Rhodophyta, Cryptophyta, Haptophyta and Percolozoa. J. Gen. Appl. Microbiol., 52, 235-240.
Keywords: Cryptophyta; Glaucophyta; Haptophyta; Perclozoa; polyamine; Rhodophyta
Strain(s): 8, 274, 276, 277, 282, 353, 388, 699, 706, 715, 741, 763, 764, 1016, 1017, 1032, 1036, 1332, 1441, 1456, 1457, 1462, 1463, 1467, 1473, 3377
PubMed: 17116972
DOI: 10.2323/jgam.52.235

Nakajima, N., Teramoto, T., Kasai, F., Sano, T., Tamaoki, M., Aono, M., Kubo, A., Kamada, H., Azumi, Y., Saji, H. 2007 Glycosylation of bisphenol A by freshwater microalgae. Chemosphere, 69, 934-941.
Keywords: Metabolite; Glucoside; Galactoside; Endocrine disruptors
Strain(s): 35, 94, 96, 151, 245, 424, 468, 763
PubMed: 17629547
DOI: 10.1016/j.chemosphere.2007.05.088

Chong, J., Jackson, C., Kim, J. I., Yoon, H. S., Reyes-Prieto, A. 2014 Molecular markers from different genomic compartments reveal cryptic diversity within glaucophyte species. Mol. Phylogenet. Evol., 76, 181-188.
Keywords: Glaucophyta; Cyanophora; Glaucocystis; Cryptic species diversity; Archaeplastida
Strain(s): 763, 764, 966, 1369, 1961
PubMed: 24680917
DOI: 10.1016/j.ympev.2014.03.019

Smith, D. R., Jackson, C. J., Reyes-Prieto, A. 2014 Nucleotide substitution analyses of the glaucophyte Cyanophora suggest an ancestrally lower mutation rate in plastid vs mitochondrial DNA for the Archaeplastida. Mol. Phylogenet. Evol., 79, 380-384.
Keywords: Plastid genome; Cyanelle; Genetic diversity; Organelle genome; Nucleotide substitution
Strain(s): 763
PubMed: 25017510
DOI: 10.1016/j.ympev.2014.07.001

Takahashi, T., Sato, M., Toyooka, K., Matsuzaki, R., Kawafune, K., Kawamura, M., Okuda,K., Nozaki, H. 2014 Five Cyanophora (Cyanophorales, Glaucophyta) species delineated based on morphological and molecular data. J. Phycol., 50, 1058-1069.
Keywords: Cyanophora; field-emission scanning electron microscopy; freeze-fracture method; Glaucophyta; molecular phylogeny; morphology; new species; secondary structure of nuclear rDNA ITS-2; taxonomy; ultrastructure
Strain(s): 547, 763, 764, 3645
PubMed: 26988787
DOI: 10.1111/jpy.12236

Decelle, J., Romac, S., Stern, R. F., Bendif, E., Zingone, A., Audic, S., Guiry, M. D., Guillou, L., Tessier, D., Le Gall, F., Gourvil, P., Dos Santos, A. L., Probert, I., Vaulot, D., de Vargas, C., Christen, R. 2015 PhytoREF: a reference database of the plastidial 16S rRNAgene of photosynthetic eukaryotes with curated taxonomy. Mol. Ecol. Resour., 15, 1435-1445.
Keywords: high-throughput sequencing; metabarcoding; photosynthesis; phytoplankton; plastidial 16S rRNA gene; protists
Strain(s): 763, 764, 2565
PubMed: 25740460
DOI: 10.1111/1755-0998.12401

Russell, S., Jackson, C., Reyes-Prieto, A. 2021 High sequence divergence but limited architectural rearrangements in organelle genomes of Cyanophora (Glaucophyta) species. J. Eukaryot. Microbiol., 68, e12831 (article ID).
Keywords: Archaeplastida; genomic distance; glauco-phytes; mitochondria; organelle genomics; plastid; substitution rates
Strain(s): 763, 764
PubMed: 33142007
DOI: 10.1111/jeu.12831

Price, D. C., Steiner, J. M., Yoon, H. S., Bhattacharya, D., Löffelhardt, W. 2017 Glaucophyta In Handbook of the protists, 2nd ed. , Eds. by Archibald, J. M., Simpson, A. G. B., Slamovits, C. H., Springer, pp. 1-65.
Keywords: Archaeplastida; Cyanophora paradoxa; Muroplasts; Single primary endosymbiotic event; Phylogenomics; Carbon-concentrating mechanism; Eukaryotic peptidoglycan; Phycobilisomes
Strain(s): 547, 763, 764, 966, 1369, 1961, 2141, 3645
DOI: 10.1007/978-3-319-32669-6_42-1

Reyes-Prieto, A., Russell, S., Figueroa-Martinez, F., Jackson, C. 2018 Chapter Four - Comparative Plastid Genomics of Glaucophytes. In Plastid Genome Evolution - Advances in Botanical Research, Eds. by Chaw, S.-M., Jansen, R. K., Academic press 85, pp. 95-127.
Keywords: Glaucophyta; Cyanophora; Glaucocystis; Archaeplastida; Plastid; Plastid genome; HGT
Strain(s): 763, 764
DOI: 10.1016/bs.abr.2017.11.012

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