Strain Data

A big image opens when the thumbnail is clicked.(nies-0764.jpg)
Strain number NIES-764  
Phylum Glaucophyta  
Class Glaucophyceae  
Scientific name Cyanophora sudae Tos.Takah. & Nozaki  
Synonym  
Former name Cyanophora tetracyanea Korshikov  
Common name  
Locality (Date of collection) Yoshino Park, Mitsukaido, Ibaraki, Japan (1987-01-17)  
Latitude / Longitude 36.075731 / 140.001211 
Habitat (Isolation source) Freshwater (Soil)  
History < Suda, Shoichiro  
Isolator (Date of isolation) Suda, Shoichiro (1991-08-24)  
Identified by Takahashi, Toshiyuki  
State of strain Subculture; Unialgal; Clonal; Axenic[2018 Dec]  
Culture condition
(Preculture condition) 		Medium:  CSi  
Temperature:  20 C
Light intensity:  6 µmol photons/m2/sec, L/D cycle:  10L:14D
Duration:  2 M  
Gene information Plastid genome ( MG601102 ) , Mitochondrial genome ( MT919637 ) , 16S rRNA ( LN735196 ) , 18S rRNA ( KF631375 ) , 18S-ITS1-5.8S-ITS2 ( KF631373 ) , ITS1-5.8S-ITS2 ( AB973925 ) , CO1 ( KF631391 ) , cob ( KF631341 ) , psbA ( KF631321 ) , psaB ( AB973453 ) , rbcL ( KF631392 )  
Cell size (min - max) - 15 μm  
Organization  
Characteristics Authentic strain (Takahashi et al. 2014) ; Genome decoded strain (Reyes-Prieto et al, 2018;（ Russell et al. 2021)  
Other strain no. Other strain no. : S118  
Remarks Axenic 
Movie  
Related strain information
(Large number of orders and same genus or species)
Strain number Scientific name Common name Habitat (Isolation source) Characteristics
NIES-547
 		Cyanophora paradoxa   Freshwater (Lake water) alkalophilic  
NIES-763
 		Cyanophora kugrensii   Freshwater (Soil) Authentic strain (Takahashi et al. 2014)  
NIES-3645
 		Cyanophora cuspidata   Freshwater (Paddy soil) Phototaxis ; Authentic strain (Takahashi et al. 2014)  
Related strain information
(Used in same reference)
Strain number Scientific name Common name Habitat (Isolation source) Characteristics
NIES-741
 		Haptolina hirta   Marine (Seawater) Offensive odor ; Mixotrophic ; Phagotrophic  
NIES-353
 		Gephyrocapsa oceanica Coccolithophore   Marine (Seawater) Planktonic  
NIES-8
 		Chrysotila roscoffensis Coccolithophore   Marine Red tide  
NIES-2565
 		Triparma laevis   Marine (Seawater) Genome decoded strain (Kuwata et al. 2020;（ Ban et al. 2023) ; Siliceous, Non-flagellated stage[2018 May]  
NIES-966
 		Glaucocystis oocystiformis   Freshwater (Pond water)  
Reference
Hamana, K. & Niitsu, M. 2006 Cellular polyamines of lower eukaryotes belonging to the phyla Glaucophyta, Rhodophyta, Cryptophyta, Haptophyta and Percolozoa. J. Gen. Appl. Microbiol., 52, 235-240.
Keywords: Cryptophyta; Glaucophyta; Haptophyta; Perclozoa; polyamine; Rhodophyta
Strain(s): 8,  274,  276,  277,  282,  353,  388,  699,  706,  715,  741,  763,  764,  1016,  1017,  1032,  1036,  1332,  1441,  1456,  1457,  1462,  1463,  1467,  1473,  3377 
PubMed: 17116972
DOI: 10.2323/jgam.52.235

Chong, J., Jackson, C., Kim, J. I., Yoon, H. S., Reyes-Prieto, A. 2014 Molecular markers from different genomic compartments reveal cryptic diversity within glaucophyte species. Mol. Phylogenet. Evol., 76, 181-188.
Keywords: Glaucophyta; Cyanophora; Glaucocystis; Cryptic species diversity; Archaeplastida
Strain(s): 763,  764,  966,  1369,  1961 
PubMed: 24680917
DOI: 10.1016/j.ympev.2014.03.019

Takahashi, T., Sato, M., Toyooka, K., Matsuzaki, R., Kawafune, K., Kawamura, M., Okuda,K., Nozaki, H. 2014 Five Cyanophora (Cyanophorales, Glaucophyta) species delineated based on morphological and molecular data. J. Phycol., 50, 1058-1069.
Keywords: Cyanophora; field-emission scanning electron microscopy; freeze-fracture method; Glaucophyta; molecular phylogeny; morphology; new species; secondary structure of nuclear rDNA ITS-2; taxonomy; ultrastructure
Strain(s): 547,  763,  764,  3645 
PubMed: 26988787
DOI: 10.1111/jpy.12236

Decelle, J., Romac, S., Stern, R. F., Bendif, E., Zingone, A., Audic, S., Guiry, M. D., Guillou, L., Tessier, D., Le Gall, F., Gourvil, P., Dos Santos, A. L., Probert, I., Vaulot, D., de Vargas, C., Christen, R. 2015 PhytoREF: a reference database of the plastidial 16S rRNAgene of photosynthetic eukaryotes with curated taxonomy. Mol. Ecol. Resour., 15, 1435-1445.
Keywords: high-throughput sequencing; metabarcoding; photosynthesis; phytoplankton; plastidial 16S rRNA gene; protists
Strain(s): 763,  764,  2565 
PubMed: 25740460
DOI: 10.1111/1755-0998.12401

Russell, S., Jackson, C., Reyes-Prieto, A. 2021 High sequence divergence but limited architectural rearrangements in organelle genomes of Cyanophora (Glaucophyta) species. J. Eukaryot. Microbiol., 68, e12831 (article ID).
Keywords: Archaeplastida; genomic distance; glauco-phytes; mitochondria; organelle genomics; plastid; substitution rates
Strain(s): 763,  764 
PubMed: 33142007
DOI: 10.1111/jeu.12831

Price, D. C., Steiner, J. M., Yoon, H. S., Bhattacharya, D., Löffelhardt, W. 2017 Glaucophyta In Handbook of the protists, 2nd ed. , Eds. by Archibald, J. M., Simpson, A. G. B., Slamovits, C. H., Springer, pp. 1-65.
Keywords: Archaeplastida; Cyanophora paradoxa; Muroplasts; Single primary endosymbiotic event; Phylogenomics; Carbon-concentrating mechanism; Eukaryotic peptidoglycan; Phycobilisomes
Strain(s): 547,  763,  764,  966,  1369,  1961,  2141,  3645 
DOI: 10.1007/978-3-319-32669-6_42-1

Reyes-Prieto, A., Russell, S., Figueroa-Martinez, F., Jackson, C. 2018 Chapter Four - Comparative Plastid Genomics of Glaucophytes. In Plastid Genome Evolution - Advances in Botanical Research, Eds. by Chaw, S.-M., Jansen, R. K., Academic press 85, pp. 95-127.
Keywords: Glaucophyta; Cyanophora; Glaucocystis; Archaeplastida; Plastid; Plastid genome; HGT
Strain(s): 763,  764 
DOI: 10.1016/bs.abr.2017.11.012

Sumiya, N. 2021 Coordination mechanism of cell and cyanelle division in the glaucophyte alga Cyanophora sudae. Protoplasma, 259, 855–867.
Keywords: Cyanelle division; Glaucophyte; Cell cycle; Cyanophora
Strain(s): 764 
PubMed: 34553240
DOI: 10.1007/s00709-021-01704-3

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