Strain Data

Strain number		NIES-712
Phylum		Cryptophyta
Class		Cryptophyceae
Scientific name		Chroomonas caudata Geitler
Synonym
Former name
Common name
Locality (Date of collection)		Funada-ike Pond, Chiba, Chiba, Japan (1985-09-**)
Latitude / Longitude		35.599701 / 140.137377
Habitat (Isolation source)		Freshwater (Pond water)
History		< Erata, Mayumi
Isolator (Date of isolation)		Erata, Mayumi (1985-09-13)
Identified by		Erata, Mayumi
State of strain		Subculture; Unialgal; Clonal; Non-axenic
Culture condition (Preculture condition)		Medium: AF-6 Temperature: 15 C Light intensity: 9-10 µmol photons/m²/sec, L/D cycle: 10L:14D Duration: 45 D
Gene information		16S rRNA ( AB591422 ) , 18S rRNA ( AB240963 HG328379 HG328387 ) , 28S rRNA ( HE820918 ) , Nuclear actin ( AB126024 ) , psbO ( AB545776 )
Cell size (min - max)
Organization		Unicellular; Flagellate
Characteristics
Other strain no.		Other strain no. : #00171
Remarks
Movie

Related strain information (Large number of orders and same genus or species)
Strain number	Scientific name	Common name	Habitat (Isolation source)	Characteristics
NIES-705	Chroomonas placoidea		Marine	Authentic strain
NIES-706	Chroomonas nordstedtii		Freshwater (Bog water)
NIES-708	Chroomonas nordstedtii		Freshwater (Pond water)
NIES-1370	Chroomonas mesostigmatica		Marine (Sand and seawater)
NIES-713	Chroomonas coerulea		Freshwater (Bog water)

Related strain information (Used in same reference)
Strain number	Scientific name	Common name	Habitat (Isolation source)	Characteristics
NIES-2365	Cyclotella meneghiniana	Centric diatom	Freshwater (Lake water)	Euryhaline
NIES-2732	Sellaphora seminulum	Pennate diatom	Freshwater (Stone)	Test strain for AGP etc. (Ishihara, S. et al. 2006)
NIES-1864	Aurearena cruciata		Marine (Sand)
NIES-1349	Achnanthes kuwaitensis	Pennate diatom	Marine (A polyethylene bag on a beach)
NIES-3391	Pelagomonas calceolata		Marine (Seawater)

Reference
Erata, M. & Chihara, M. 1991 Cryptomonads of Japan (2) three species of Chroomonas. J. Jpn. Bot., 66, 7-11. Strain(s): 706, 707, 708, 710, 712, 713, 714, 727 Yokoyama, A., Takahashi, F., Kataoka, H., Hara, Y., Nozaki, H. 2011 Evolutionary analysis of the nuclear-encoded photosynthetic gene psbO from tertiary plastid-containing algae in Dinophyta. J. Phycol., 47, 407-414. Keywords: diatoms; Dinophyta; endosymbiosis; Haptophyta; N-terminal region; phylogeny; plastid; psbO genes Strain(s): 274, 712 PubMed: 27021871 DOI: 10.1111/j.1529-8817.2011.00961.x Hoef-Emden, K. 2012 Pitfalls of establishing DNA barcoding systems in protists: the cryptophyceae as a test case. PLoS One, 7, e43652 (article ID). Strain(s): 274, 706, 708, 711, 712, 713, 714, 1004, 1370 PubMed: 22970104 DOI: 10.1371/journal.pone.0043652 Tanifuji, G., Erata, M., Ishida, K-I., Onodera, N., Hara, Y. 2006 Diversity of secondary endosymbiont-derived actin-coding genes in cryptomonads and their evolutionary implications. J. Plant Res., 119, 205-215. Keywords: Cryptomonads; Nucleomorph; Symbiotic gene reorganization; Symbiont actin gene Strain(s): 697, 700, 701, 702, 708, 712, 765 PubMed: 16570126 DOI: 10.1007/s10265-006-0263-5 Tanifuji, G., Onodera, N., Hara, Y. 2010 Nucleomorph genome diversity and its phylogenetic implications in cryptomonad algae. Phycol. Res., 58, 230-237. Keywords: cryptomonads; endosymbiosis; evolution; genome reduction; nucleomorph; phylogeny Strain(s): 274, 277, 280, 697, 699, 701, 702, 704, 708, 712, 715, 765 DOI: 10.1111/j.1440-1835.2010.00580.x Hoef-Emden, K. 2014 Osmotolerance in the Cryptophyceae: Jacks-of-all-trades in the Chroomonas clade. Protist, 165, 123-143. Keywords: Chroomonas; contractile vacuole; cryptomonads; floridoside; osmolarity; osmoregulation; osmotolerance; phylogeny Strain(s): 708, 712, 713, 714, 1004 PubMed: 24568876 DOI: 10.1016/j.protis.2014.01.001 Mitani, E., Nakayama, F., Matsuwaki, I., Ichi, I., Kawabata, A., Kawachi, M., Kato, M. 2017 Fatty acid composition profiles of 235 strains of three microalgal divisions within the NIES Microbial Culture Collection. Microb. Resour. Syst., 33, 19-29. Keywords: Cryptophyta; docosahexaenoic acid; eicosapentaenoic acid; fatty acid; Haptophyta; Heterokontophyta; microalgae Strain(s): 1, 8, 9, 14, 15, 17, 71, 115, 223, 225, 233, 234, 265, 274, 275, 276, 277, 278, 279, 280, 281, 282, 284, 293, 323, 324, 330, 333, 345, 347, 348, 350, 353, 372, 377, 388, 391, 395, 407, 408, 409, 413, 414, 417, 461, 462, 466, 487, 534, 548, 553, 556, 557, 558, 559, 560, 562, 587, 588, 589, 590, 603, 605, 622, 623, 695, 696, 697, 698, 699, 700, 701, 702, 703, 704, 705, 706, 707, 708, 710, 711, 712, 713, 714, 715, 716, 741, 765, 766, 805, 837, 997, 1001, 1002, 1003, 1004, 1005, 1006, 1007, 1009, 1011, 1016, 1017, 1044, 1045, 1046, 1047, 1302, 1303, 1324, 1330, 1339, 1340, 1349, 1353, 1370, 1375, 1376, 1379, 1383, 1384, 1385, 1386, 1387, 1391, 1392, 1393, 1395, 1398, 1399, 1400, 1401, 1699, 1700, 1730, 1813, 1815, 1816, 1826, 1827, 1831, 1862, 1863, 1864, 1865, 1874, 1963, 1964, 1965, 1974, 1975, 1976, 2142, 2143, 2144, 2145, 2147, 2148, 2300, 2331, 2332, 2351, 2363, 2364, 2365, 2369, 2370, 2376, 2506, 2533, 2534, 2535, 2536, 2537, 2590, 2633, 2668, 2689, 2690, 2691, 2693, 2694, 2696, 2697, 2707, 2716, 2717, 2718, 2720, 2722, 2723, 2725, 2726, 2729, 2730, 2731, 2732, 2770, 2771, 2772, 2773, 2839, 2840, 2841, 2842, 2843, 2844, 2859, 2872, 2878, 2890, 2899, 3391, 3689, 3690, 3691 DOI: 10.60369/microresys.33.1_19 Wittek, S. 2018 Acquisition of photoautotrophy in kleptoplastic dinoflagellates-Nusuttodinium aeruginosum/acidotum as a case study. PhD thesis, Universität zu Köln, Germany, 124 pp. Strain(s): 712, 713, 714 Al-Azab, A. J. S., Widyaningrum, D., Hirakawa, H., Hayashi, Y., Tanaka, S., Ohama, T. 2021 A resin cyanoacrylate nanoparticle as an acute cell death inducer to broad spectrum of microalgae. Algal Res., 54, 102191 (article ID). Keywords: Cell death; Coccolith; Non-green algae; ROS; Poly (isobutylcyanoacrylate) nanoparticles Strain(s): 1, 5, 7, 15, 274, 331, 534, 590, 615, 699, 712, 900, 1017, 1308, 1310, 2764, 2778 DOI: 10.1016/j.algal.2021.102191 Hoef-Emden, K. 2018 Revision of the genus Chroomonas HANSGIRG: The benefits of DNA-containing specimens. Protist, 169, 662-681. Keywords: Chroomonas; novel species; phylogeny; ancient DNA; revision; Cryptophyceae Strain(s): 708, 712, 1004 PubMed: 30125802 DOI: 10.1016/j.protis.2018.04.005 Xing, H., Li, Q., Zhao, Y., Gao, H., Li, L., Zhang, Y., Yu, X. 2023 Exogenous proline boosts the co-accumulation of astaxanthin and biomass in stress-induced Haematococcus pluvialis. Bioresour. Technol., 369, 128488 (article ID). Keywords: Haematococcus pluvialis; Proline; Biomass; Astaxanthin productivity; Abiotic stresses Strain(s): 144, 712, 797 PubMed: 36528181 DOI: 10.1016/j.biortech.2022.128488 Yamaguchi, H., Nakayama, T., Kai, A., Inouye, I. 2011 Taxonomy and phylogeny of a new kleptoplastidal dinoflagellate, Gymnodinium myriopyrenoides sp. nov. (Gymnodiniales, Dinophyceae), and its cryptophyte symbiont. Protist, 162, 650-667. Keywords: dinoflagellate; Gymnodinium myriopyrenoides; kleptochloroplast; phylogeny; taxonomy Strain(s): 706, 712, 713 PubMed: 21497133 DOI: 10.1016/j.protis.2011.01.002

Reference

Erata, M. & Chihara, M. 1991 Cryptomonads of Japan (2) three species of Chroomonas. J. Jpn. Bot., 66, 7-11.
Strain(s): 706, 707, 708, 710, 712, 713, 714, 727

Yokoyama, A., Takahashi, F., Kataoka, H., Hara, Y., Nozaki, H. 2011 Evolutionary analysis of the nuclear-encoded photosynthetic gene psbO from tertiary plastid-containing algae in Dinophyta. J. Phycol., 47, 407-414.
Keywords: diatoms; Dinophyta; endosymbiosis; Haptophyta; N-terminal region; phylogeny; plastid; psbO genes
Strain(s): 274, 712
PubMed: 27021871
DOI: 10.1111/j.1529-8817.2011.00961.x

Hoef-Emden, K. 2012 Pitfalls of establishing DNA barcoding systems in protists: the cryptophyceae as a test case. PLoS One, 7, e43652 (article ID).
Strain(s): 274, 706, 708, 711, 712, 713, 714, 1004, 1370
PubMed: 22970104
DOI: 10.1371/journal.pone.0043652

Tanifuji, G., Erata, M., Ishida, K-I., Onodera, N., Hara, Y. 2006 Diversity of secondary endosymbiont-derived actin-coding genes in cryptomonads and their evolutionary implications. J. Plant Res., 119, 205-215.
Keywords: Cryptomonads; Nucleomorph; Symbiotic gene reorganization; Symbiont actin gene
Strain(s): 697, 700, 701, 702, 708, 712, 765
PubMed: 16570126
DOI: 10.1007/s10265-006-0263-5

Tanifuji, G., Onodera, N., Hara, Y. 2010 Nucleomorph genome diversity and its phylogenetic implications in cryptomonad algae. Phycol. Res., 58, 230-237.
Keywords: cryptomonads; endosymbiosis; evolution; genome reduction; nucleomorph; phylogeny
Strain(s): 274, 277, 280, 697, 699, 701, 702, 704, 708, 712, 715, 765
DOI: 10.1111/j.1440-1835.2010.00580.x

Hoef-Emden, K. 2014 Osmotolerance in the Cryptophyceae: Jacks-of-all-trades in the Chroomonas clade. Protist, 165, 123-143.
Keywords: Chroomonas; contractile vacuole; cryptomonads; floridoside; osmolarity; osmoregulation; osmotolerance; phylogeny
Strain(s): 708, 712, 713, 714, 1004
PubMed: 24568876
DOI: 10.1016/j.protis.2014.01.001

Mitani, E., Nakayama, F., Matsuwaki, I., Ichi, I., Kawabata, A., Kawachi, M., Kato, M. 2017 Fatty acid composition profiles of 235 strains of three microalgal divisions within the NIES Microbial Culture Collection. Microb. Resour. Syst., 33, 19-29.
Keywords: Cryptophyta; docosahexaenoic acid; eicosapentaenoic acid; fatty acid; Haptophyta; Heterokontophyta; microalgae
Strain(s): 1, 8, 9, 14, 15, 17, 71, 115, 223, 225, 233, 234, 265, 274, 275, 276, 277, 278, 279, 280, 281, 282, 284, 293, 323, 324, 330, 333, 345, 347, 348, 350, 353, 372, 377, 388, 391, 395, 407, 408, 409, 413, 414, 417, 461, 462, 466, 487, 534, 548, 553, 556, 557, 558, 559, 560, 562, 587, 588, 589, 590, 603, 605, 622, 623, 695, 696, 697, 698, 699, 700, 701, 702, 703, 704, 705, 706, 707, 708, 710, 711, 712, 713, 714, 715, 716, 741, 765, 766, 805, 837, 997, 1001, 1002, 1003, 1004, 1005, 1006, 1007, 1009, 1011, 1016, 1017, 1044, 1045, 1046, 1047, 1302, 1303, 1324, 1330, 1339, 1340, 1349, 1353, 1370, 1375, 1376, 1379, 1383, 1384, 1385, 1386, 1387, 1391, 1392, 1393, 1395, 1398, 1399, 1400, 1401, 1699, 1700, 1730, 1813, 1815, 1816, 1826, 1827, 1831, 1862, 1863, 1864, 1865, 1874, 1963, 1964, 1965, 1974, 1975, 1976, 2142, 2143, 2144, 2145, 2147, 2148, 2300, 2331, 2332, 2351, 2363, 2364, 2365, 2369, 2370, 2376, 2506, 2533, 2534, 2535, 2536, 2537, 2590, 2633, 2668, 2689, 2690, 2691, 2693, 2694, 2696, 2697, 2707, 2716, 2717, 2718, 2720, 2722, 2723, 2725, 2726, 2729, 2730, 2731, 2732, 2770, 2771, 2772, 2773, 2839, 2840, 2841, 2842, 2843, 2844, 2859, 2872, 2878, 2890, 2899, 3391, 3689, 3690, 3691
DOI: 10.60369/microresys.33.1_19

Wittek, S. 2018 Acquisition of photoautotrophy in kleptoplastic dinoflagellates-Nusuttodinium aeruginosum/acidotum as a case study. PhD thesis, Universität zu Köln, Germany, 124 pp.
Strain(s): 712, 713, 714

Al-Azab, A. J. S., Widyaningrum, D., Hirakawa, H., Hayashi, Y., Tanaka, S., Ohama, T. 2021 A resin cyanoacrylate nanoparticle as an acute cell death inducer to broad spectrum of microalgae. Algal Res., 54, 102191 (article ID).
Keywords: Cell death; Coccolith; Non-green algae; ROS; Poly (isobutylcyanoacrylate) nanoparticles
Strain(s): 1, 5, 7, 15, 274, 331, 534, 590, 615, 699, 712, 900, 1017, 1308, 1310, 2764, 2778
DOI: 10.1016/j.algal.2021.102191

Hoef-Emden, K. 2018 Revision of the genus Chroomonas HANSGIRG: The benefits of DNA-containing specimens. Protist, 169, 662-681.
Keywords: Chroomonas; novel species; phylogeny; ancient DNA; revision; Cryptophyceae
Strain(s): 708, 712, 1004
PubMed: 30125802
DOI: 10.1016/j.protis.2018.04.005

Xing, H., Li, Q., Zhao, Y., Gao, H., Li, L., Zhang, Y., Yu, X. 2023 Exogenous proline boosts the co-accumulation of astaxanthin and biomass in stress-induced Haematococcus pluvialis. Bioresour. Technol., 369, 128488 (article ID).
Keywords: Haematococcus pluvialis; Proline; Biomass; Astaxanthin productivity; Abiotic stresses
Strain(s): 144, 712, 797
PubMed: 36528181
DOI: 10.1016/j.biortech.2022.128488

Yamaguchi, H., Nakayama, T., Kai, A., Inouye, I. 2011 Taxonomy and phylogeny of a new kleptoplastidal dinoflagellate, Gymnodinium myriopyrenoides sp. nov. (Gymnodiniales, Dinophyceae), and its cryptophyte symbiont. Protist, 162, 650-667.
Keywords: dinoflagellate; Gymnodinium myriopyrenoides; kleptochloroplast; phylogeny; taxonomy
Strain(s): 706, 712, 713
PubMed: 21497133
DOI: 10.1016/j.protis.2011.01.002

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