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Strain Data
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| Strain number | NIES-716 | |||
|---|---|---|---|---|
| Phylum | Heterokontophyta | |||
| Class | Raphidophyceae | |||
| Scientific name | Haramonas dimorpha Horiguchi | |||
| Synonym | ||||
| Former name | ||||
| Common name | ||||
| Locality (Date of collection) | Daintree River, Australia (1991-09-21) | |||
| Latitude / Longitude | / 145.46666666 | |||
| Habitat (Isolation source) | Brackish water (Sediment) | |||
| History | < Horiguchi, Takeo | |||
| Isolator (Date of isolation) | Horiguchi, Takeo (1991-10-25) | |||
| Identified by | Horiguchi, Takeo | |||
| State of strain | Subculture; Unialgal; Clonal; Axenic[2023 Jul] | |||
|
Culture condition (Preculture condition) |
Medium:
f/2
;
ESM
Temperature: 20 C Light intensity: 10-17 µmol photons/m2/sec, L/D cycle: 10L:14D Duration: 2 M |
|||
| Gene information | 18S rRNA ( AB365025 ) , ITS1-5.8S-ITS2 ( AB334370 ) , CO1 ( AB334516 AB445450 ) , GapC1 ( AB459523 ) , GapC2 ( AB459524 ) , petD ( AB280618 ) , psaA ( AB367952 ) , psbB ( AB280591 ) , psbC ( AB280597 ) , psbD ( AB280602 ) , rbcL ( AB280608 AB334443 ) , tufA ( AB367953 ) | |||
| Cell size (min - max) | ||||
| Organization | Unicellular; Flagellate | |||
| Characteristics | Planktonic ; Benthic ; Authentic strain (Horiguchi 1996) | |||
| Other strain no. | ||||
| Remarks | Fragile species to transportation stresses; Read and agree "How to order 4.1"; Axenic | |||
| Movie | ||||
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Related strain information
(Large number of orders and same genus or species)
|
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|---|---|---|---|---|
| Strain number | Scientific name | Common name | Habitat (Isolation source) | Characteristics |
|
NIES-1870 |
Haramonas pauciplastida | Marine (Sand) | Benthic ; Authentic strain (Yamaguchi et al. 2008) | |
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Related strain information
(Used in same reference)
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|---|---|---|---|---|
| Strain number | Scientific name | Common name | Habitat (Isolation source) | Characteristics |
NIES-1330
|
Prymnesium calathiferum | Marine (Sand) | ||
|
NIES-2534 |
Skeletonema dohrnii | Centric diatom | Marine (Seawater) | Red tide ; Planktonic |
|
NIES-562 |
Chrysochromulina parva | Freshwater (Lake water) | Planktonic | |
|
NIES-1016 |
Hymenomonas coronata | Coccolithophore | Brackish water (Water) | Planktonic |
|
NIES-1981 |
Chattonella marina | Marine (Seawater) | Red tide | |
| Reference |
|---|
|
Horiguchi, T.
1996
Haramonas dimorpha gen. et sp. nov. (Raphidophyceae), a new marine raphidophyte from Australian mangrove.
Phycol. Res.,
44,
143-150.
Keywords: Haramonas dimorpha gen et sp. nov.; mangrove; Raphidophyceae; taxonomy; tubular invagination; ultrastructure Strain(s): 716 DOI: 10.1111/j.1440-1835.1996.tb00043.x Iida, K., Takishita, K., Ohshima, K., Inagaki, Y. 2007 Assessing the monophyly of chlorophyll-c containing plastids by multi-gene phylogenies under the unlinked model conditions. Mol. Phylogenet. Evol., 45(1), 227-238. Keywords: chromist; chromalveolate; secondary endosymbiosis; model misspecification; separate model; concatenate model Strain(s): 1, 15, 548, 670, 716 PubMed: 17591448 DOI: 10.1016/j.ympev.2007.05.003 Kamikawa, R., Masuda, I., Demura, M., Oyama, K., Yoshimatsu, S., Kawachi, M., Sako, Y. 2009 Mitochondrial group II introns in the Raphidophycean flagellate Chattonella spp. suggest a diatom-to-Chattonella lateral group II intron transfer. Protist, 160, 364-375. Keywords: Chattonella; cytochrome c oxidase subunit 1 (cox1); diatoms; group II intron; lateral transfer; Raphidophyceae Strain(s): 1, 2, 3, 14, 85, 86, 115, 118, 121, 161, 462, 557, 558, 603, 671, 716, 849, 1303, 1975, 1976, 2391 PubMed: 19346162 DOI: 10.1016/j.protis.2009.02.003 Takishita, K., Yamaguchi, H., Maruyama, T., Inagaki, Y. 2009 A hypothesis for the evolution of nuclear-encoded, plastid-targeted glyceraldehyde-3 phosphate dehydrogenase genes in "chromalveolate" members. PLoS One, 4, e4737 (article ID). Strain(s): 15, 275, 706, 716 PubMed: 19270733 DOI: 10.1371/journal.pone.0004737 Yamaguchi, H., Hoppenrath, M., Takishita, K., Horiguchi, T. 2008 Haramonas pauciplastida sp. nov. (Raphidophyceae, Heterokontophyta) and phylogenetic analyses of Haramonas species using small subunit ribosomal RNA gene sequences. Phycol. Res., 56, 127-138. Keywords: Haramonas pauciplastida sp. nov.; phylogeny; Raphidophyceae; small subunit rDNA; taxonomy; ultrastructure Strain(s): 716, 1870 DOI: 10.1111/j.1440-1835.2008.00493.x Demura, M., Noël, M.-H., Kasai, F., Watanabe, M. M., Kawachi, M. 2009 Taxonomic revision of Chattonella antiqua, C. marina and C. ovata (Raphidophyceae) based on their morphological characteristics and genetic diversity. Phycologia, 48, 518-535. Keywords: Chattonella antiqua; Chattonella marina; Chattonella ovata; COI; COX1; Genetic diversity; ITS; Microsatellite; Morphology; Phylogeny; Population; Raphidophyceae; rbcL; Speciation; Taxonomy Strain(s): 1, 2, 3, 5, 6, 9, 10, 14, 83, 84, 85, 113, 114, 116, 118, 146, 161, 293, 557, 561, 603, 671, 716, 849, 1974, 1975, 1976, 1977, 1978, 1980, 1981, 1986, 2383, 2391, 2405, 2406 DOI: 10.2216/08-98.1 Yang, EC., Boo, GH., Kim, HJ., Cho, SM., Boo, SM., Andersen, R. A., Yoon, HS. 2012 Supermatrix data highlight the phylogenetic relationships of photosynthetic Stramenopiles. Protist, 163, 217-231. Keywords: Heterokont algae; molecular phylogenetic analysis; multigene phylogeny; reduced flagellar clade; stramenochromes Strain(s): 293, 622, 716, 1863, 1864 PubMed: 22001261 DOI: 10.1016/j.protis.2011.08.001 Mitani, E., Nakayama, F., Matsuwaki, I., Ichi, I., Kawabata, A., Kawachi, M., Kato, M. 2017 Fatty acid composition profiles of 235 strains of three microalgal divisions within the NIES Microbial Culture Collection. Microb. Resour. Syst., 33, 19-29. Keywords: Cryptophyta; docosahexaenoic acid; eicosapentaenoic acid; fatty acid; Haptophyta; Heterokontophyta; microalgae Strain(s): 1, 8, 9, 14, 15, 17, 71, 115, 223, 225, 233, 234, 265, 274, 275, 276, 277, 278, 279, 280, 281, 282, 284, 293, 323, 324, 330, 333, 345, 347, 348, 350, 353, 372, 377, 388, 391, 395, 407, 408, 409, 413, 414, 417, 461, 462, 466, 487, 534, 548, 553, 556, 557, 558, 559, 560, 562, 587, 588, 589, 590, 603, 605, 622, 623, 695, 696, 697, 698, 699, 700, 701, 702, 703, 704, 705, 706, 707, 708, 710, 711, 712, 713, 714, 715, 716, 741, 765, 766, 805, 837, 997, 1001, 1002, 1003, 1004, 1005, 1006, 1007, 1009, 1011, 1016, 1017, 1044, 1045, 1046, 1047, 1302, 1303, 1324, 1330, 1339, 1340, 1349, 1353, 1370, 1375, 1376, 1379, 1383, 1384, 1385, 1386, 1387, 1391, 1392, 1393, 1395, 1398, 1399, 1400, 1401, 1699, 1700, 1730, 1813, 1815, 1816, 1826, 1827, 1831, 1862, 1863, 1864, 1865, 1874, 1963, 1964, 1965, 1974, 1975, 1976, 2142, 2143, 2144, 2145, 2147, 2148, 2300, 2331, 2332, 2351, 2363, 2364, 2365, 2369, 2370, 2376, 2506, 2533, 2534, 2535, 2536, 2537, 2590, 2633, 2668, 2689, 2690, 2691, 2693, 2694, 2696, 2697, 2707, 2716, 2717, 2718, 2720, 2722, 2723, 2725, 2726, 2729, 2730, 2731, 2732, 2770, 2771, 2772, 2773, 2839, 2840, 2841, 2842, 2843, 2844, 2859, 2872, 2878, 2890, 2899, 3391, 3689, 3690, 3691 DOI: 10.60369/microresys.33.1_19 |
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