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Strain Data
| Strain number | NIES-2838 | |||
|---|---|---|---|---|
| Phylum | Heterokontophyta | |||
| Class | Bacillariophyceae | |||
| Scientific name | Skeletonema costatum (Greville) Cleve | |||
| Synonym | Melosira costata Greville 1866 | |||
| Former name | ||||
| Common name | Centric diatom | |||
| Locality (Date of collection) | Dokai Bay, Kitakyushu, Fukuoka, Japan (2007-10-02) | |||
| Latitude / Longitude | 33.88388888 / 130.78722222 | |||
| Habitat (Isolation source) | Marine (Seawater) | |||
| History | < Yamada, Machiko | |||
| Isolator (Date of isolation) | Yamada, Machiko (2007-10-02) | |||
| Identified by | Yamada, Machiko | |||
| State of strain | Subculture; Unialgal; Clonal; Non-axenic | |||
|
Culture condition (Preculture condition) |
Medium:
ESM
;
MNK
Temperature: 15 C Light intensity: 3-10 µmol photons/m2/sec, L/D cycle: 10L:14D Duration: 21 D |
|||
| Gene information | 28S rRNA ( AB572617 ) , 18S rRNA ( AB948138 ) , CO1 ( AB706217 ) | |||
| Cell size (min - max) | ||||
| Organization | Unicellular | |||
| Characteristics | Red tide (Yamada et al. 2010) ; Planktonic | |||
| Other strain no. | Other strain no. : FDK009 | |||
| Remarks | Unstable | |||
| Movie | ||||
|
Related strain information
(Large number of orders and same genus or species)
|
||||
|---|---|---|---|---|
| Strain number | Scientific name | Common name | Habitat (Isolation source) | Characteristics |
NIES-16
|
Skeletonema marinoi-dohrnii complex | Centric diatom | Marine (Sediment) | Red tide ; Planktonic ; DNA sequencing indicates this strain is included in Skeletonema marinoi/dohrnii clade |
|
NIES-2842 |
Skeletonema menzelii | Centric diatom | Marine (Seawater) | Planktonic |
|
NIES-2537 |
Skeletonema tropicum | Centric diatom | Marine (Seawater) | Red tide ; Planktonic |
NIES-323
|
Skeletonema marinoi-dohrnii complex | Centric diatom | Marine (Seawater) | Red tide ; Planktonic ; DNA sequencing indicates this strain is included in Skeletonema marinoi/dohrnii clade |
NIES-324
|
Skeletonema marinoi-dohrnii complex | Centric diatom | Marine (Seawater) | Red tide ; Test strain (Khanam et al. 2017) ; Planktonic ; DNA sequencing indicates this strain is included in Skeletonema marinoi/dohrnii clade |
|
Related strain information
(Whose relevance due to simultaneous purchases and other information is inferred by AI)
|
||||
|---|---|---|---|---|
| Strain number | Scientific name | Common name | Habitat (Isolation source) | Characteristics |
|
NIES-3698 |
Skeletonema sp. | Centric diatom | Marine (Seawater) | Red tide ; Planktonic |
|
Related strain information
(Used in same reference)
|
||||
|---|---|---|---|---|
| Strain number | Scientific name | Common name | Habitat (Isolation source) | Characteristics |
|
NIES-2841 |
Skeletonema japonicum | Centric diatom | Marine (Seawater) | Red tide (Yamada et al. 2010) ; Planktonic |
|
NIES-2843 |
Skeletonema pseudocostatum | Centric diatom | Marine (Seawater) | Red tide (Yamada et al. 2010) ; Planktonic |
NIES-2844
|
Skeletonema tropicum | Centric diatom | Marine (Seawater) | Red tide (Yamada et al. 2010) ; Planktonic |
|
NIES-2839 |
Skeletonema dohrnii | Centric diatom | Marine (Seawater) | Red tide (Yamada et al. 2010) ; Planktonic |
|
NIES-2837 |
Skeletonema ardens | Centric diatom | Marine (Seawater) | Red tide (Yamada et al. 2010) |
| Reference |
|---|
|
Yamada, M., Katsuki, E., Otsubo, M., Kawaguchi, M., Ichimi, K., Keriyama, H., Tada, K., Harrison, P. J.
2010
Species diversity of the genus Skeltonema (Bacillariophyceae) in the Industrial Harbor Dokai Bay, Japan.
J. Oceanogr.,
66,
755-771.
Keywords: Skeletonema; species diversity; isolation characteristics; Dokai Bay; LSU rDNA; SSU rDNA; SEM Strain(s): 2837, 2838, 2839, 2841, 2842, 2843, 2844 DOI: 10.1007/s10872-010-0062-4 Kaeriyama, H., Katsuki, E., Otsubo, M., Yamada, K., Ichimi, K., Tada, K., Harrison, P. J. 2011 Effects of temperature and irradiance on growth of strains belonging to seven Skeletonema species isolated from Dokai Bay, southern Japan. Eur. J. Phycol., 46, 113-124. Keywords: Dokai Bay; irradiance; physiology; Skeletonema species; specific growth rate; temperature Strain(s): 2837, 2838, 2839, 2841, 2842, 2843, 2844 DOI: 10.1080/09670262.2011.565128 Yamada, M., Otsubo, M., Tsutsumi, Y., Mizota, C., Nakamura, Y., Takahashi, K., Iwataki M. 2017 Utility of mitochondrial-encoded cytochrome c oxidase I gene for phylogenetic analysis and species identification of the planktonic diatom genus Skeletonema. Phycol. Res., 65, 217-225. Keywords: cox1; genetic marker; LSU rDNA; phylogenetictree; species delimitation; SSU rDNA Strain(s): 16, 223, 2837, 2838, 2842 DOI: 10.1111/pre.12179 |
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